Browse Element(s) Details


Os.53827.1.S1_at

Description gb:AK100293.1
DB_XREF= gi:32985502
TID=Os.53827.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075P06, full insert sequence.
FL= gb:AK100293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5931011/11MAP3K-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53827.1.S1_at--1136--531Chr04:35048864..35048884 (21 bp)
ATCGCCGTCGATTACTACATGAGGA
LOC_Os04g59310
Os.53827.1.S1_at--818--2991Chr04:35048719..35048743 (25 bp)
AATGCGGCTGCGACAGCATAGCATA
LOC_Os04g59310
Os.53827.1.S1_at--884--291Chr04:35048628..35048726 (25 bp)
ATAGCATACTGCAAGCCTGGGTCAG
LOC_Os04g59310
Os.53827.1.S1_at--666--10611Chr04:35048601..35048625 (25 bp)
TTCGGGAGCTGCAGTTTGTCATCGC
LOC_Os04g59310
Os.53827.1.S1_at--608--1511Chr04:35048518..35048542 (25 bp)
AGCACCAGAGATGGCTCCTAGTTCA
LOC_Os04g59310
Os.53827.1.S1_at--7--8251Chr04:35048488..35048512 (25 bp)
GGCAGAACCACCAGAGACGGCGACG
LOC_Os04g59310
Os.53827.1.S1_at--977--5951Chr04:35048421..35048445 (25 bp)
GAGAAGGACGACACGACGGGCACAT
LOC_Os04g59310
Os.53827.1.S1_at--407--3851Chr04:35048341..35048365 (25 bp)
CTGCAGCTTCCTCTTTGGATTATTA
LOC_Os04g59310
Os.53827.1.S1_at--237--6551Chr04:35048324..35048348 (25 bp)
GATTATTATTGCCATCTCTTCTCCT
LOC_Os04g59310
Os.53827.1.S1_at--995--9251Chr04:35048300..35048324 (25 bp)
TCCTCCACCTTTATATTTCAGATTG
LOC_Os04g59310
Os.53827.1.S1_at--626--6391Chr04:35048276..35048300 (25 bp)
GATCGATGAGGCTTTTATCCATCTC
LOC_Os04g59310
Target Sequence 
ATCGCCGTCGATTACTACATGAGGAGTAAGGGCGGTGGAGCTCCGTTGGCGACCGACGTGGCCAACGGCCGCCAGCAATG
CGGCTGCGACAGCATAGCATACTGCAAGCCTGGGTCAGCGTTCGGGAGCTGCAGTTTGTCATCGCCTCCTGCAGCGCCAC
CAAAGATGGCTGCTGCTTCACCGCCGGCAGCGGCTCCAGCACCAGCACCAGAGATGGCTCCTAGTTCACCGCCGGCAGAA
CCACCAGAGACGGCGACGGAGGCTGCTGGTTCAGCGGTGCGACCGGCGTCCATCAAGTTAGAGAAGGACGACACGACGGG
CACATCGCCAGCGGACACCGCCAAATCCTCCTCCTCTAATCGCTCTCCTCATCCGTCCAGCTGCAGCTTCCTCTTTGGAT
TATTATTGCCATCTCTTCTCCTCCTCCACCTTTATATTTCAGATTGATCGATGAGGCTTTTATCCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis