Browse Element(s) Details


Os.264.1.S1_at

Description gb:AK073360.1
DB_XREF= gi:32983383
TID=Os.264.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full insert sequence.
FL= gb:AK073360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5926011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59210Os.48373.1.S1_at11/114+35002578..35004921Peroxidase family protein, expressed
LOC_Os04g59220NANA4+35007027..35008424retrotransposon protein, putative, unclassified
LOC_Os04g59230NANA4+35009433..35010639retrotransposon protein, putative, unclassified
LOC_Os04g59240Os.38172.1.S1_x_at3/114+35013638..35014178transposon protein, putative, unclassified
LOC_Os04g59250OsAffx.22848.4.S1_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.3.S1_x_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.4.S1_x_at1/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.264.1.S1_at--512--8331Chr04:35026798..35026822 (25 bp)
GGCTGCAGAACCTGGACGTGATCAC
LOC_Os04g59260
Os.264.1.S1_at--221--2731Chr04:35026605..35026629 (25 bp)
AAGCAATGTGCCGAGGACTGACAGG
LOC_Os04g59260
Os.264.1.S1_at--951--9051Chr04:35026556..35026580 (25 bp)
TGCTTCAGGACCAACAGCCAGAGCC
LOC_Os04g59260
Os.264.1.S1_at--383--711Chr04:35026510..35026534 (25 bp)
ATGAGGAGGGCTTCGCTGCTTCTGC
LOC_Os04g59260
Os.264.1.S1_at--538--9071Chr04:35026488..35026512 (25 bp)
TGCTTGATCATTCAGCTGTCTGTCG
LOC_Os04g59260
Os.264.1.S1_at--174--3871Chr04:35026473..35026497 (25 bp)
CTGTCTGTCGTTGCTCGTTAATTAG
LOC_Os04g59260
Os.264.1.S1_at--79--1051Chr04:35026442..35026466 (25 bp)
AGGTGCTTGACGTCGCTAGCTGATC
LOC_Os04g59260
Os.264.1.S1_at--225--10011Chr04:35026426..35026450 (25 bp)
TAGCTGATCCTAGTCTCTTTAGTCT
LOC_Os04g59260
Os.264.1.S1_at--261--1131Chr04:35026415..35026439 (25 bp)
AGTCTCTTTAGTCTTCAGGCCTTGG
LOC_Os04g59260
Os.264.1.S1_at--726--3491Chr04:35026400..35026424 (25 bp)
CAGGCCTTGGCTTTTGTACGCATAT
LOC_Os04g59260
Os.264.1.S1_at--200--271Chr04:35026379..35026403 (25 bp)
ATATGCTTTCGTTATGTCCGTGCAA
LOC_Os04g59260
Target Sequence 
GGCTGCAGAACCTGGACGTGATCACCCCCGACGCCTTCGACAACGCCTANTACATCGCGCTCATCCACAACCAGGGCGTC
TTCACCTCCGACATGGCGCTCATCAAGGACCGGATCACGGCGCCCATCGTCAGGCAGTTCGCCACGGACAAGGCCGCCTT
CTTCACGCAGTTCGCCAAGTCCATGGTCAAACTAAGCAATGTGCCGAGGACTGACAGGAACGTCGGCGAGATCCGCCGCA
GCTGCTTCAGGACCAACAGCCAGAGCCTCGTCGACTTCGCCACCAGCGATGAGGAGGGCTTCGCTGCTTCTGCTTGATCA
TTCAGCTGTCTGTCGTTGCTCGTTAATTAGGGAGCTAGGTGCTTGACGTCGCTAGCTGATCCTAGTCTCTTTAGTCTTCA
GGCCTTGGCTTTTGTACGCATATGCTTTCGTTATGTCCGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis