Browse Element(s) Details


Os.48373.1.S1_at

Description gb:AK070680.1
DB_XREF= gi:32980704
TID=Os.48373.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060N16, full insert sequence.
FL= gb:AK070680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5921011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59200Os.27864.1.S1_at11/114+34996052..34997680Peroxidase family protein, expressed
LOC_Os04g59210Os.48373.1.S1_at11/114+35002578..35004921Peroxidase family protein, expressed
LOC_Os04g59220NANA4+35007027..35008424retrotransposon protein, putative, unclassified
LOC_Os04g59230NANA4+35009433..35010639retrotransposon protein, putative, unclassified
LOC_Os04g59240Os.38172.1.S1_x_at3/114+35013638..35014178transposon protein, putative, unclassified
LOC_Os04g59250OsAffx.22848.4.S1_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.3.S1_x_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.4.S1_x_at1/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48373.1.S1_at--440--1071Chr04:35003143..35003167 (25 bp)
AGGGCGTCCCAAGCGACGAAGGCAA
LOC_Os04g59210
Os.48373.1.S1_at--471--1851Chr04:35003128..35003152 (25 bp)
ACGAAGGCAACAGCTCGACGTCGGC
LOC_Os04g59210
Os.48373.1.S1_at--549--4611Chr04:35003077..35003101 (25 bp)
GCGACGCCGGCACAACTATATCAGG
LOC_Os04g59210
Os.48373.1.S1_at--27--1971Chr04:35002921..35002945 (25 bp)
ACTGTCCAATATGCTCGGCAGCGTG
LOC_Os04g59210
Os.48373.1.S1_at--738--7651Chr04:35002889..35002913 (25 bp)
GGGATGGCGACAAAGTGCCTCTCCT
LOC_Os04g59210
Os.48373.1.S1_at--290--3771Chr04:35002857..35002881 (25 bp)
CTCTCTCCCTTCCTTATGGTGCGGG
LOC_Os04g59210
Os.48373.1.S1_at--186--9971Chr04:35002792..35002816 (25 bp)
TACCTGTGGTAACATTTGGCTCCGC
LOC_Os04g59210
Os.48373.1.S1_at--20--8671Chr04:35002788..35002812 (25 bp)
TGTGGTAACATTTGGCTCCGCGTTC
LOC_Os04g59210
Os.48373.1.S1_at--995--6591Chr04:35002667..35002691 (25 bp)
GATTGTTTTTCTTTGCTAGCGGTAC
LOC_Os04g59210
Os.48373.1.S1_at--738--1591Chr04:35002650..35002674 (25 bp)
AGCGGTACTACCTCATAATTTCAAT
LOC_Os04g59210
Os.48373.1.S1_at--198--1751Chr04:35002641..35002665 (25 bp)
ACCTCATAATTTCAATCTCGTACTA
LOC_Os04g59210
Target Sequence 
AGGGCGTCCCAAGCGACGAAGGCAACAGCTCGACGTCGGCGCCACCTCACCTTCTCTCCTCTTGACGCGACGCCGGCACA
ACTATATCAGGGGATGAAGAGGACAAGAACAACGGCAACGTTTNTCCCCTCTCCCCACCTTTTTCACCCCTNNNCTTCGT
CTGTGGCCACGGCGTNGTGTCGCCGGTGCGNTCTGAAGCGCTCCTCACCTCATCGCCCTCCTCCACTGTCCAATATGCTC
GGCAGCGTGGAGCGCGGGGATGGCGACAAAGTGCCTCTCCTCGGTCCTCTCTCTCCCTTCCTTATGGTGCGGGGCATGAA
ATGTGGGATCCAAAGNTGCAGATTTNGACGAGGTACCTGTGGTAACATTTGGCTCCGCGTTCTTCAGAGCAACNAANTAG
TNCGACGTGTGGNGGNATCTCCAANCTANTNNGNCTCGGGCTGAATGCCACGTCAATGCACTNTNAAAGCCAATAATAAG
ATTGTTTTTCTTTGCTAGCGGTACTACCTCATAATTTCAATCTCGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis