Browse Element(s) Details


Os.7938.1.S1_at

Description gb:CB653151
DB_XREF= gi:29656876
DB_XREF=OSJNEc03O09.r
CLONE=OSJNEc03O09
TID=Os.7938.1
CNT=28
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.7938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-B06, full insert sequence
FL= gb:AK065090.1 gb:AK104928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5919011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59200Os.27864.1.S1_at11/114+34996052..34997680Peroxidase family protein, expressed
LOC_Os04g59210Os.48373.1.S1_at11/114+35002578..35004921Peroxidase family protein, expressed
LOC_Os04g59220NANA4+35007027..35008424retrotransposon protein, putative, unclassified
LOC_Os04g59230NANA4+35009433..35010639retrotransposon protein, putative, unclassified
LOC_Os04g59240Os.38172.1.S1_x_at3/114+35013638..35014178transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7938.1.S1_at--301--9711Chr04:34988631..34988655 (25 bp)
TCAAAGTGCGCCTTCGTGAGGCCCG
LOC_Os04g59190
Os.7938.1.S1_at--988--9391Chr04:34988618..34988642 (25 bp)
TCGTGAGGCCCGTGGACGACGCCTT
LOC_Os04g59190
Os.7938.1.S1_at--673--10571Chr04:34988595..34988619 (25 bp)
TTCTCCCGGAAGATGGCCGCCAACT
LOC_Os04g59190
Os.7938.1.S1_at--691--1791Chr04:34988561..34988585 (25 bp)
ACCCCAACACGAAGCAGGACCTGGA
LOC_Os04g59190
Os.7938.1.S1_at--648--5391Chr04:34988551..34988575 (25 bp)
GAAGCAGGACCTGGACGTCGTCACC
LOC_Os04g59190
Os.7938.1.S1_at--424--8311Chr04:34988508..34988532 (25 bp)
GGCTACTACATAGCGCTCACCAGGA
LOC_Os04g59190
Os.7938.1.S1_at--258--2391Chr04:34988438..34988462 (25 bp)
AAACTGCGGCCATCGTCAGGCGGTT
LOC_Os04g59190
Os.7938.1.S1_at--287--771Chr04:34988236..34988260 (25 bp)
ATGTCGCTCATCGATCATAATCGAG
LOC_Os04g59190
Os.7938.1.S1_at--262--5231Chr04:34988209..34988233 (25 bp)
GAATATCTAGGGTCGACATCATTAT
LOC_Os04g59190
Os.7938.1.S1_at--207--7811Chr04:34988199..34988223 (25 bp)
GGTCGACATCATTATGCCGTTGTAT
LOC_Os04g59190
Os.7938.1.S1_at--16--4231Chr04:34988143..34988167 (25 bp)
CCGGTCGGTCGGTCTCGCCAGTATG
LOC_Os04g59190
Target Sequence 
TCAAAGTGCGCCTTCGTGAGGCCCGTGGACGACGCCTTCTCCCGGAAGATGGCCGCCAACTGCAGCGCCAACCCCAACAC
GAAGCAGGACCTGGACGTCGTCACCCCCATCACCTTCGACAACGGCTACTACATAGCGCTCACCAGGAAGCAGGGGGTGT
TCACCTCCGACATGGCGCTCATCCTGGACCCCCAAACTGCGGCCATCGTCAGGCGGTTCGCGCAGGACAAGGCCGCCTTC
TTCACGCAGTTCGTTACGTCCATCGTCAAGCTGAGCAAGGTGCCGAGGCCCGGCGGGAACAAAGGCGAGATCCGCCGCAA
CTGCTTCAAGACCAACAGCGGAGCACGCCTCGTGGACGTCGTGGAGGGCTTCGCTGCCTCTGCTTAATTCATGTCATGTC
GCTCATCGATCATAATCGAGATGAATATCTAGGGTCGACATCATTATGCCGTTGTATGTGTGACCTAGTACGTCCGCCCC
TTTTGGGCCCGGTCGGTCGGTCTCGCCAGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis