Browse Element(s) Details


Os.47669.1.S1_at

Description gb:BI812086
DB_XREF= gi:16577991
DB_XREF=C006E03
CLONE=C006E03
TID=Os.47669.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47669 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g591901/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59200Os.27864.1.S1_at11/114+34996052..34997680Peroxidase family protein, expressed
LOC_Os04g59210Os.48373.1.S1_at11/114+35002578..35004921Peroxidase family protein, expressed
LOC_Os04g59220NANA4+35007027..35008424retrotransposon protein, putative, unclassified
LOC_Os04g59230NANA4+35009433..35010639retrotransposon protein, putative, unclassified
LOC_Os04g59240Os.38172.1.S1_x_at3/114+35013638..35014178transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47669.1.S1_at--734--10631NONE
TTCGCGCAGGACAAGCCCCTTCTTG
NONE
Os.47669.1.S1_at--804--10731NONE
TTGCACGCAAGTTCTGTTACGTCCA
NONE
Os.47669.1.S1_at--466--4111NONE
CGCAAGTTCTGTTACGTCCATCGTC
NONE
Os.47669.1.S1_at--439--3511Chr04:34988227..34988261 (25 bp)
CATGTCGCTCATCGAGATGAATATC
LOC_Os04g59190
Os.47669.1.S1_at--127--1291NONE
AGATGAATATCTAGGTCAGACATCA
NONE
Os.47669.1.S1_at--279--7831NONE
GGTCAGACATCATTATCCGTTGTAT
NONE
Os.47669.1.S1_at--86--10591NONE
TTCTCCCCCATATGCCCTTTTATTT
NONE
Os.47669.1.S1_at--907--3651NONE
CTTTTATTTTCTTACGCCGTGCGCG
NONE
Os.47669.1.S1_at--826--10551NONE
TTCTTACGCCGTGCGCGCTTAATAA
NONE
Os.47669.1.S1_at--387--4491NONE
GCCGTGCGCGCTTAATAAACTACTC
NONE
Os.47669.1.S1_at--661--9151NONE
TGCGCGCTTAATAAACTACTCCCCA
NONE
Target Sequence 
TTCGCGCAGGACAAGCCCCTTCTTGCACGCAAGTTCTGTTACGTCCATCGTCAACTGAGCAAGGTGCCGAGGCCCGGCGG
GAACAAAGGCGAGATCCGCCGCAACTGCTTCAAGACCAACAGCGGAGCACGCCTCGTGGACGTCGTGGAGGGCTTCGCTG
CCTCTGCTTAATTCANTCATGTCGCTCATCGAGATGAATATCTAGGTCAGACATCATTATCCGTTGTATGTGTGACCTAG
TACGTCTCCCCCTTTTGGCCCCGTCGTTCGTTCTCCCCCATATGCCCTTTTATTTTCTTACGCCGTGCGCGCTTAATAAA
CTACTCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis