Browse Element(s) Details


Os.11552.1.S2_at

Description gb:AF019743.1
DB_XREF= gi:2425100
GEN=OsCPX1
TID=Os.11552.1
CNT=72
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.11552 (NCBI UniGene Cluster)
DEF=Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds.
PROD=cationic peroxidase
FL= gb:AK060789.1 gb:AF019743.1 gb:AK104833.1 gb:U95217.1 gb:AK102307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5915011/11Peroxidase 12 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59110Os.28943.1.S1_x_at1/114+34943788..34945506retrotransposon protein, putative, unclassified
LOC_Os04g59120Os.55040.1.S1_at11/114+34948765..34951922Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g59130Os.19114.1.S2_at11/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59130Os.19114.1.S1_at10/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11552.1.S2_at--783--9431Chr04:34968917..34968941 (25 bp)
TCGGTCACGCAGGAGCTGGACGTCC
LOC_Os04g59150
Os.11552.1.S2_at--17--2471Chr04:34968872..34968896 (25 bp)
AACAAGTACTACTTCGACCTCATCG
LOC_Os04g59150
Os.11552.1.S2_at--101--7671Chr04:34968839..34968863 (25 bp)
GGGATCTTCAAGTCCGACCAGGGCC
LOC_Os04g59150
Os.11552.1.S2_at--906--511Chr04:34968812..34968836 (25 bp)
ATCGAGGACGCGCAGACCAACCGCA
LOC_Os04g59150
Os.11552.1.S2_at--496--6311Chr04:34968723..34968747 (25 bp)
GATGAGCCAGATGGACGTCCTCACC
LOC_Os04g59150
Os.11552.1.S2_at--573--4171Chr04:34968607..34968631 (25 bp)
CCGCCGACGCCTAATTAACTTATGG
LOC_Os04g59150
Os.11552.1.S2_at--508--971Chr04:34968529..34968553 (25 bp)
AGGATGCCATCTGCGCGTGGTGTTT
LOC_Os04g59150
Os.11552.1.S2_at--637--3991Chr04:34968514..34968538 (25 bp)
CGTGGTGTTTGGTTTCCATGCATTC
LOC_Os04g59150
Os.11552.1.S2_at--1120--10671Chr04:34968501..34968525 (25 bp)
TTCCATGCATTCTCTGCTTAGTTAG
LOC_Os04g59150
Os.11552.1.S2_at--857--10471Chr04:34968449..34968473 (25 bp)
TTACTACTCGATTCCTCGGTCGGGA
LOC_Os04g59150
Os.11552.1.S2_at--247--3791Chr04:34968435..34968459 (25 bp)
CTCGGTCGGGACAGAGTAACTGCAT
LOC_Os04g59150
Target Sequence 
TCGGTCACGCAGGAGCTGGACGTCCGCACGCCCAACGCCTTCGACAACAAGTACTACTTCGACCTCATCGCCAAGCAGGG
GATCTTCAAGTCCGACCAGGGCCTCATCGAGGACGCGCAGACCAACCGCACCGCCGTCCGCTTCGCCCTCAACCAGGCCG
CCTTCTTCGACCAGTTCGCACGCTCCATGGTCAAGATGAGCCAGATGGACGTCCTCACCGGCAACGCCGGCGAGATCCGC
AACAACTGCGCCGCTCCCAACCGCCGCTCCTCCGACCTCCTNCAACGCTGCCGACGACGACCAAGGCTTCGCCGCCGACG
CCTAATTAACTTATGGAGTAATTAGTGATCGTTTTATGTTTATGTTTTGTGCTAGTAATAATAATTAAGAGGATGCCATC
TGCGCGTGGTGTTTGGTTTCCATGCATTCTCTGCTTAGTTAGAATGGTTTTGCTTCATAAAAAGTAAAGTTACTACTCGA
TTCCTCGGTCGGGACAGAGTAACTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11552.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis