Browse Element(s) Details


Os.19114.1.S1_at

Description gb:AK062547.1
DB_XREF= gi:32972565
TID=Os.19114.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G09, full insert sequence.
FL= gb:AK098928.1 gb:AK104333.1 gb:AK066910.1 gb:AK062547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5913010/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59100NANA4+34937582..34943165retrotransposon protein, putative, unclassified
LOC_Os04g59110Os.28943.1.S1_x_at1/114+34943788..34945506retrotransposon protein, putative, unclassified
LOC_Os04g59120Os.55040.1.S1_at11/114+34948765..34951922Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g59130Os.19114.1.S2_at11/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59130Os.19114.1.S1_at10/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19114.1.S1_at--1077--10291Chr04:34957583..34957607 (25 bp)
TTTCCGCAGCATAGTTCGTGATTTC
LOC_Os04g59130
Os.19114.1.S1_at--977--9631Chr04:34957606..34957630 (25 bp)
TCAGGGACAGTTTCGGGACTCTATC
LOC_Os04g59130
Os.19114.1.S1_at--479--4871Chr04:34957660..34957684 (25 bp)
GCTTTTCGGGCCGTCACAGAGGGAA
LOC_Os04g59130
Os.19114.1.S1_at--1014--5631Chr04:34957713..34957737 (25 bp)
GACACGCCCGTGGTAGCTCAGCAAA
LOC_Os04g59130
Os.19114.1.S1_at--570--3811Chr04:34957756..34957780 (25 bp)
CTCCTGAATTACTTCGCGACGTGAT
LOC_Os04g59130
Os.19114.1.S1_at--40--2811Chr04:34957795..34957819 (25 bp)
AAGATGATAGCAATTGGCCCTCCCG
LOC_Os04g59130
Os.19114.1.S1_at--875--2911Chr04:34957821..34957845 (25 bp)
AAGGATGTTGTTGCCTGCGCTTCAG
LOC_Os04g59130
Os.19114.1.S1_at--652--9151Chr04:34957836..34957860 (25 bp)
TGCGCTTCAGTTTGTACGACTTGGA
LOC_Os04g59130
Os.19114.1.S1_at--338--2711Chr04:34957905..34957929 (25 bp)
AAGCTTACATTTCCAGTGTCTCTTA
LOC_Os04g59130
Os.19114.1.S1_at--753--10451NONE
TTAGCTCTGCTGTGCTTGATGAGAC
NONE
Os.19114.1.S1_at--527--5451Chr04:34959426..34959450 (25 bp)
GAACGACACACACTGACTACATCAT
LOC_Os04g59130
Target Sequence 
TTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCT
TTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAG
TGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAA
GGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTG
GAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAA
TCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAA
AAGGAGCCGGCGAACGACACACACTGACTACATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis