Browse Element(s) Details


Os.55040.1.S1_at

Description gb:AK107360.1
DB_XREF= gi:32992569
TID=Os.55040.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A04, full insert sequence.
FL= gb:AK107360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5912011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59080OsAffx.22699.1.S1_x_at2/114+34919958..34925933retrotransposon protein, putative, unclassified
LOC_Os04g59090NANA4+34926037..34928183hypothetical protein
LOC_Os04g59100NANA4+34937582..34943165retrotransposon protein, putative, unclassified
LOC_Os04g59110Os.28943.1.S1_x_at1/114+34943788..34945506retrotransposon protein, putative, unclassified
LOC_Os04g59120Os.55040.1.S1_at11/114+34948765..34951922Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g59130Os.19114.1.S2_at11/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59130Os.19114.1.S1_at10/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55040.1.S1_at--323--5751Chr04:34951521..34951545 (25 bp)
GACGGCATGCGAACAACCATCGGAT
LOC_Os04g59120
Os.55040.1.S1_at--102--231Chr04:34951559..34951583 (25 bp)
ATATTGCATCCTCTTTACGACACAG
LOC_Os04g59120
Os.55040.1.S1_at--405--2151Chr04:34951580..34951604 (25 bp)
ACAGCCATAGATACTTCCATCGTTC
LOC_Os04g59120
Os.55040.1.S1_at--251--9231Chr04:34951595..34951619 (25 bp)
TCCATCGTTCTTGCGGGTTTTAATT
LOC_Os04g59120
Os.55040.1.S1_at--674--9731Chr04:34951623..34951647 (25 bp)
TAATTACTCTAGCTAGCTCAGGCTC
LOC_Os04g59120
Os.55040.1.S1_at--33--9751Chr04:34951662..34951686 (25 bp)
TAATTAACTCGCACGTACGTACGGC
LOC_Os04g59120
Os.55040.1.S1_at--468--1891Chr04:34951678..34951702 (25 bp)
ACGTACGGCCTGCTTAATCCATGAT
LOC_Os04g59120
Os.55040.1.S1_at--714--3031Chr04:34951693..34951717 (25 bp)
AATCCATGATCTCTGTTCGAGGGTA
LOC_Os04g59120
Os.55040.1.S1_at--301--6011Chr04:34951787..34951811 (25 bp)
GAGAGCGGTCGCGATCAACAAGCTA
LOC_Os04g59120
Os.55040.1.S1_at--1133--2451Chr04:34951803..34951827 (25 bp)
AACAAGCTATCGATCGACCGTGCGT
LOC_Os04g59120
Os.55040.1.S1_at--167--231Chr04:34951871..34951895 (25 bp)
ATATTGTTGCTCTATCTCTGATCAT
LOC_Os04g59120
Target Sequence 
GACGGCATGCGAACAACCATCGGATTCGGACCGGGCGAATATTGCATCCTCTTTACGACACAGCCATAGATACTTCCATC
GTTCTTGCGGGTTTTAATTAATTAATTACTCTAGCTAGCTCAGGCTCAGCTAGCTGCTAATTAATTAACTCGCACGTACG
TACGGCCTGCTTAATCCATGATCTCTGTTCGAGGGTAACTAATTAATTAATTAATCAGCGCGAGTACGTAGAAACCAATT
AACCAATCAACAAGAAACAAACAAACGAGAGCGGTCGCGATCAACAAGCTATCGATCGACCGTGCGTACGTAGGATATGC
ATGTATGGTAGGTAGGAGAGGAGATTAAATATATTGTTGCTCTATCTCTGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis