Browse Element(s) Details


Os.21893.1.S1_x_at

Description gb:AK101245.1
DB_XREF= gi:32986454
TID=Os.21893.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032B08, full insert sequence.
FL= gb:AK101245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5916011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59120Os.55040.1.S1_at11/114+34948765..34951922Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g59130Os.19114.1.S2_at11/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59130Os.19114.1.S1_at10/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59200Os.27864.1.S1_at11/114+34996052..34997680Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21893.1.S1_x_at--132--4471Chr04:34973671..34973695 (25 bp)
GCCTGCAGGAGCTTGATGTCACCAC
LOC_Os04g59160
Os.21893.1.S1_x_at--929--2831Chr04:34973627..34973651 (25 bp)
AAGTACTACAGCAACCTGGTGGCCG
LOC_Os04g59160
Os.21893.1.S1_x_at--1027--5071Chr04:34973557..34973581 (25 bp)
GCACCAGCTGGGTGGTCAATGGCTT
LOC_Os04g59160
Os.21893.1.S1_x_at--531--1231Chr04:34973503..34973527 (25 bp)
AGTTCGGCAGCTCCATGGTGAAGCT
LOC_Os04g59160
Os.21893.1.S1_x_at--1038--5631Chr04:34973476..34973500 (25 bp)
GACAGCTCCAGGGTCCTTCAGGGAA
LOC_Os04g59160
Os.21893.1.S1_x_at--1133--7251Chr04:34973464..34973488 (25 bp)
GTCCTTCAGGGAACGTCGGCGAGAT
LOC_Os04g59160
Os.21893.1.S1_x_at--1036--851Chr04:34973380..34973404 (25 bp)
ATGGCTTCACGGCATCTGCTTGACA
LOC_Os04g59160
Os.21893.1.S1_x_at--292--8851Chr04:34973309..34973333 (25 bp)
TGATCTGAGCACTAGCTAGCCGTCT
LOC_Os04g59160
Os.21893.1.S1_x_at--705--9991Chr04:34973293..34973317 (25 bp)
TAGCCGTCTCGTGCGTGCATGATAA
LOC_Os04g59160
Os.21893.1.S1_x_at--143--7011Chr04:34973258..34973282 (25 bp)
GTACTTTGTAGTGCAGTGCGTCCCA
LOC_Os04g59160
Os.21893.1.S1_x_at--600--7291Chr04:34973243..34973267 (25 bp)
GTGCGTCCCACGTACGTGACGTATA
LOC_Os04g59160
Target Sequence 
GCCTGCAGGAGCTTGATGTCACCACCCCGGACGTGTTCGACAACAAGTACTACAGCAACCTGGTGGCCGGTCAGGGGGTG
TTCACCTCCGACCAGGGGCTCACCGGCGACTGGCGCACCAGCTGGGTGGTCAATGGCTTCGCCGGCAACCACTGGTGGTT
CTACGGCCAGTTCGGCAGCTCCATGGTGAAGCTGGGACAGCTCCAGGGTCCTTCAGGGAACGTCGGCGAGATCCGCCGCA
ACAGCTGCTTCGTGCCCAACAGCCAGACCATCCTTGCGGCCGCCGGCGACGATGGCTTCACGGCATCTGCTTGACATCAT
CACGTCAAAAGTCTTGTGTTGTACAAGACTCGATCTTGTTCTTGATCTGAGCACTAGCTAGCCGTCTCGTGCGTGCATGA
TAATACTGCGTACGTACTTTGTAGTGCAGTGCGTCCCACGTACGTGACGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21893.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis