Browse Element(s) Details


Os.4731.1.A1_s_at

Description gb:CB661833
DB_XREF= gi:29665558
DB_XREF=OSJNEd05D06.r
CLONE=OSJNEd05D06
TID=Os.4731.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.4731 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565086.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g591403/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59100NANA4+34937582..34943165retrotransposon protein, putative, unclassified
LOC_Os04g59110Os.28943.1.S1_x_at1/114+34943788..34945506retrotransposon protein, putative, unclassified
LOC_Os04g59120Os.55040.1.S1_at11/114+34948765..34951922Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g59130Os.19114.1.S2_at11/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59130Os.19114.1.S1_at10/114+34957073..34960710Tubby protein, putative, expressed
LOC_Os04g59140Os.4731.1.A1_s_at3/114+34963056..34964332expressed protein
LOC_Os04g59150Os.11552.1.S2_at11/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59150Os.11552.1.S1_at10/114+34968342..34970112Peroxidase 12 precursor, putative, expressed
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4731.1.A1_s_at--351--10271Chr04:34964208..34964232 (25 bp)
TTTGCGGGTCACTCAAGGATGGGCT
LOC_Os04g59140
Os.4731.1.A1_s_at--116--1311Chr04:34964259..34964283 (25 bp)
AGATGTTCCACAGGGTTGTGCGCAC
LOC_Os04g59140
Os.4731.1.A1_s_at--925--1411Chr04:34964290..34964314 (25 bp)
AGAAATCCTCGACTACCTCAGTAGG
LOC_Os04g59140
Os.4731.1.A1_s_at--971--8111Chr04:34964333..34964357 (25 bp)
GGACTCATTGCTTGATCCAACTTTG
NONE
Os.4731.1.A1_s_at--95--2051Chr04:34964352..34964376 (25 bp)
ACTTTGTGTGAAATGCAGCCGCTCC
NONE
Os.4731.1.A1_s_at--781--9211Chr04:34964374..34964398 (25 bp)
TCCACCGAGGTAGCTTCTCTGTAAA
NONE
Os.4731.1.A1_s_at--272--891Chr04:34964435..34964459 (25 bp)
AGGCCTGGCCTTAGTTATGATACAT
NONE
Os.4731.1.A1_s_at--1133--5251Chr04:34964504..34964528 (25 bp)
GAATCCTTACTTGAGCAGTTCTTCG
NONE
Os.4731.1.A1_s_at--510--5031Chr04:34964518..34964542 (25 bp)
GCAGTTCTTCGTACTAATGGTCTAA
NONE
Os.4731.1.A1_s_at--605--10551Chr04:34964553..34964577 (25 bp)
TTCATTCATTGCTTGTCCTGGTAAT
NONE
Os.4731.1.A1_s_at--576--8911Chr04:34964580..34964604 (25 bp)
TGAGCACTCTGGTTGGTTTGTTTCC
NONE
Target Sequence 
TTTGCGGGTCACTCAAGGATGGGCTGGACCCTCTTGAGCGCCAGGTGCGGGAGATGTTCCACAGGGTTGTGCGCACCCGG
ACAGAAATCCTCGACTACCTCAGTAGGCCGCACAACGCCGGGTGAGGACTCATTGCTTGATCCAACTTTGTGTGAAATGC
AGCCGCTCCACCGAGGTAGCTTCTCTGTAAAAGTTAGCATCTACATATACATGTCTCTGCATGAAGAAGGCCTGGCCTTA
GTTATGATACATTTGAGTTATTTCTTTCANTTTTTTTTCTCTCCTTTTGTAGCTTGTGAATCCTTACTTGAGCAGTTCTT
CGTACTAATGGTCTAATATCATTTATTTCATTCATTGCTTGTCCTGGTAATGTTGAGCACTCTGGTTGGTTTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4731.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis