Browse Element(s) Details


Os.27864.1.S1_at

Description gb:CB659199
DB_XREF= gi:29662924
DB_XREF=OSJNEc15P18.r
CLONE=OSJNEc15P18
TID=Os.27864.1
CNT=20
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.27864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118D03, full insert sequence
FL= gb:AK067667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5920011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59160Os.21893.2.S1_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59160Os.21893.1.S1_x_at11/114+34973119..34974704Peroxidase family protein, expressed
LOC_Os04g59170NANA4+34977347..34980272retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59180Os.10703.2.S1_x_at1/114+34980924..34986698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59190Os.7938.1.S1_at11/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59190Os.47669.1.S1_at1/114+34988031..34989537Peroxidase family protein, expressed
LOC_Os04g59200Os.27864.1.S1_at11/114+34996052..34997680Peroxidase family protein, expressed
LOC_Os04g59210Os.48373.1.S1_at11/114+35002578..35004921Peroxidase family protein, expressed
LOC_Os04g59220NANA4+35007027..35008424retrotransposon protein, putative, unclassified
LOC_Os04g59230NANA4+35009433..35010639retrotransposon protein, putative, unclassified
LOC_Os04g59240Os.38172.1.S1_x_at3/114+35013638..35014178transposon protein, putative, unclassified
LOC_Os04g59250OsAffx.22848.4.S1_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.3.S1_x_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.4.S1_x_at1/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27864.1.S1_at--286--7651Chr04:34996775..34996799 (25 bp)
GGGAGAGCACGCTGCGACTTCTTCC
LOC_Os04g59200
Os.27864.1.S1_at--815--5871Chr04:34996670..34996694 (25 bp)
GAGCTTGACGTGATAACGCCCGACG
LOC_Os04g59200
Os.27864.1.S1_at--582--4411Chr04:34996609..34996633 (25 bp)
GCCAGGGTGTCTTCACTTCCGACAT
LOC_Os04g59200
Os.27864.1.S1_at--260--8991Chr04:34996576..34996600 (25 bp)
TGAAGAACCAGACCACGGCGTCCAT
LOC_Os04g59200
Os.27864.1.S1_at--611--4071Chr04:34996515..34996539 (25 bp)
CGACCAGTTTGCCAAGTCCATGGTC
LOC_Os04g59200
Os.27864.1.S1_at--125--7091Chr04:34996493..34996517 (25 bp)
GTCAAGCTCAGCAAGGTACCCAGGC
LOC_Os04g59200
Os.27864.1.S1_at--100--10311Chr04:34996365..34996389 (25 bp)
TTTCGCTGCCTCTGCGTCTGCTTGA
LOC_Os04g59200
Os.27864.1.S1_at--184--9151Chr04:34996353..34996377 (25 bp)
TGCGTCTGCTTGATACTCCATACGT
LOC_Os04g59200
Os.27864.1.S1_at--154--10411Chr04:34996344..34996368 (25 bp)
TTGATACTCCATACGTCCGTCCGAC
LOC_Os04g59200
Os.27864.1.S1_at--1075--7671Chr04:34996301..34996325 (25 bp)
GGGTTCATTCCAAGAGTGATCATAT
LOC_Os04g59200
Os.27864.1.S1_at--469--6711Chr04:34996235..34996259 (25 bp)
GTTCGCGCGATATATATTTTACGTT
LOC_Os04g59200
Target Sequence 
GGGAGAGCACGCTGCGACTTCTTCCGTGACCGCGCGGGGCGCCAGGACGACACCTTCTCCAAGAAGCTGAAGTTGAACTG
CACCAAGGACCCCAACCGGCTGCAGGAGCTTGACGTGATAACGCCCGACGCCTTCGACAACGCCTACTACATCGCGCTCA
CCACCGGCCAGGGTGTCTTCACTTCCGACATGGCGCTCATGAAGAACCAGACCACGGCGTCCATCGTCAGGCAGTTCGCG
CAGGACAAGGCCGCCTTCTTCGACCAGTTTGCCAAGTCCATGGTCAAGCTCAGCAAGGTACCCAGGCCCGGCGGGAACGT
CGGCGAGATCCGCCGCAGCTGCTTCCTTTCCAACTCCAACGGACCACGCCTCGACCTCGTCGTCGCCGCCGCCACCGACC
AAGACCCCGGTTTCGCTGCCTCTGCGTCTGCTTGATACTCCATACGTCCGTCCGACCGTCCCTACTTTTAATTTGGGTTC
ATTCCAAGAGTGATCATATATATCTTGAGTATATTTTATTCCAACTGTATGTATGTATATGTTCGCGCGATATATATTTT
ACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis