Browse Element(s) Details


Os.52461.1.S1_at

Description gb:AK067271.1
DB_XREF= gi:32977289
TID=Os.52461.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099C04, full insert sequence.
FL= gb:AK067271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0285011/11expressed protein
LOC_Os06g026801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein
LOC_Os06g02840OsAffx.27430.1.S1_at11/116+1043888..1044487Harpin-induced protein 1 containing protein
LOC_Os06g02850Os.52461.1.S1_at11/116+1045030..1047727expressed protein
LOC_Os06g02850OsAffx.14477.1.S1_at1/116+1045030..1047727expressed protein
LOC_Os06g02860NANA6+1050966..1051606hypothetical protein
LOC_Os06g02870OsAffx.15237.1.S1_at11/116+1052171..1055079hypothetical protein
LOC_Os06g02880OsAffx.29663.1.S1_at8/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.380.1.S1_at4/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880Os.27345.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.13325.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02910NANA6+1070114..1070593retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52461.1.S1_at--628--1792Chr06:1045597..1045621 (25 bp)
ACCCGGTACGGGAAGATGATGGCTA
LOC_Os06g02850
Os.52461.1.S1_at--1102--1292Chr12:24443841..24443947 (25 bp)
AGATGATGGCTATCGCCGGCGGTCA
NONE
Os.52461.1.S1_at--844--533Chr06:1045277..1045301 (25 bp)
ATCGCGGCATCGATCGGATGGTGAT
LOC_Os06g02850
Os.52461.1.S1_at--809--2132Chr06:1045227..1045251 (25 bp)
ACAGTAAAGATTGGTTTGCATGCAT
LOC_Os06g02850
Os.52461.1.S1_at--733--9032Chr06:1045211..1045235 (25 bp)
TGCATGCATGGATTGGCTAATTTTT
LOC_Os06g02850
Os.52461.1.S1_at--369--8832Chr06:1045157..1045181 (25 bp)
TGATTAATTTGCATCCCAATGGATT
LOC_Os06g02850
Os.52461.1.S1_at--784--4152Chr06:1045143..1045167 (25 bp)
CCCAATGGATTGGTGTAACATCATA
LOC_Os06g02850
Os.52461.1.S1_at--564--10194Chr12:15785443..15785782 (25 bp)
TATATCTGTGTGTTGATGCATGTGA
NONE
Os.52461.1.S1_at--546--2112Chr06:1045082..1045106 (25 bp)
ACATGATGTGTGTTACTGTGTTTTT
LOC_Os06g02850
Os.52461.1.S1_at--177--2812Chr06:1045048..1045072 (25 bp)
AAGATCATGTTGTGTATGTTCCGAA
LOC_Os06g02850
Os.52461.1.S1_at--973--6612Chr06:1045040..1045064 (25 bp)
GTTGTGTATGTTCCGAAAAGCCATC
LOC_Os06g02850
Target Sequence 
ACCCGGTACGGGAAGATGATGGCTATCGCCGGCGGTCAAGAAGACGACGAGGCGGCGGCGGAGGAGACGACGGTGGTGCG
CAAGGGGGCGAGGCTGGGGAAGGCGCTGATGGACGAGGCGGCCGGCGGCGACGAGGCGGCGGTGTGGAAGCTGGTGGCCG
ACGTGTGGACGGAGATCGTCGTGTACGTGGCGCCGGCGAGGGACGCCGAGCAGGTGAGGGCGCACGGCGAGGCGCTGGCG
CGCGGCGGCGAGTTCGTCACCGTGCTCTGGGCGCTCGTCACGCACACCGGCATTGCCCGCCCCGCCGCCGCGTCGGTGTG
ATCGCGGCATCGATCGGATGGTGATTGAGGATACTGATGGTTGGAGTGGTACAGTAAAGATTGGTTTGCATGCATGGATT
GGCTAATTTTTGGATTGATTGATTGTTAATCACTTCATTATGATTAATTTGCATCCCAATGGATTGGTGTAACATCATAT
ATCTGTGTGTTGATGCATGTGATATATACATACATACATGATGTGTGTTACTGTGTTTTTTTTCATGTAAAGATCATGTT
GTGTATGTTCCGAAAAGCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis