Browse Element(s) Details


OsAffx.27428.1.S1_at

Description tigr:9634.m00186
TID=OsAffx.27428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0280011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02750Os.55711.1.S1_at1/116+997123..1001420retrotransposon protein, putative, unclassified
LOC_Os06g02760OsAffx.27427.1.S1_at9/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.32596.1.S1_x_at6/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_x_at3/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_at2/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.54901.1.S1_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02760OsAffx.30177.1.S1_x_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02770Os.53313.1.S1_at9/116+1008684..1010304expressed protein
LOC_Os06g02780Os.9382.1.S1_at11/116+1010587..1013689Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02790OsAffx.30284.1.S1_at11/116+1015825..1018105hypothetical protein
LOC_Os06g02790OsAffx.10809.1.S1_at1/116+1015825..1018105hypothetical protein
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein
LOC_Os06g02840OsAffx.27430.1.S1_at11/116+1043888..1044487Harpin-induced protein 1 containing protein
LOC_Os06g02850Os.52461.1.S1_at11/116+1045030..1047727expressed protein
LOC_Os06g02850OsAffx.14477.1.S1_at1/116+1045030..1047727expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27428.1.S1_at--581--6491Chr06:1024672..1024696 (25 bp)
GATAGCGTACGCCATCAAGATGGTC
LOC_Os06g02800
OsAffx.27428.1.S1_at--761--1571Chr06:1024595..1024619 (25 bp)
AGCGGCCGTCGAACATGTCCGGGAA
LOC_Os06g02800
OsAffx.27428.1.S1_at--254--4691Chr06:1024532..1024556 (25 bp)
GCGGCTTCGGCCAAATATACTACAC
LOC_Os06g02800
OsAffx.27428.1.S1_at--193--371Chr06:1024503..1024527 (25 bp)
ATCAAGGCGTTATTGGCCGGCAGGA
LOC_Os06g02800
OsAffx.27428.1.S1_at--299--7231Chr06:1024462..1024486 (25 bp)
GTCGCCGACATACTTCGTCAAAACG
LOC_Os06g02800
OsAffx.27428.1.S1_at--415--7091Chr06:1024446..1024470 (25 bp)
GTCAAAACGGGCCTCTTGGACATGG
LOC_Os06g02800
OsAffx.27428.1.S1_at--1038--5651Chr06:1024428..1024452 (25 bp)
GACATGGCCGTGATACCGCGGCTGA
LOC_Os06g02800
OsAffx.27428.1.S1_at--435--8911Chr06:1024346..1024370 (25 bp)
TGAGCTCCAAGGATCTCAGGCCCTA
LOC_Os06g02800
OsAffx.27428.1.S1_at--825--9631Chr06:1024331..1024355 (25 bp)
TCAGGCCCTACTTCATGGACTTGTA
LOC_Os06g02800
OsAffx.27428.1.S1_at--269--7031Chr06:1024309..1024333 (25 bp)
GTACAAGGGCAACACCATGCGCGAC
LOC_Os06g02800
OsAffx.27428.1.S1_at--150--1431Chr06:1024136..1024160 (25 bp)
AGAACGACCATTCCATCGACATGAC
LOC_Os06g02800
Target Sequence 
GATAGCGTACGCCATCAAGATGGTCGGGCGAGAGAGGCCGCTGGTGGTGAGTGTGACCGGTCATACGGTGAAGGTGCAGC
GGCCGTCGAACATGTCCGGGAACCTCACCTTCGCCTTCACCGTCAGGGCCGCCAACACCGGCGGCTTCGGCCAAATATAC
TACACCAACATCAAGGCGTTATTGGCCGGCAGGAGCGCGTCGTCGCCGGCGTCGCCGACATACTTCGTCAAAACGGGCCT
CTTGGACATGGCCGTGATACCGCGGCTGACGGCCGTCTCGCAGTCCTTCGTGATGTCCGGCATCGGTGCCAACGGGGACG
GGACGATGAGCTCCAAGGATCTCAGGCCCTACTTCATGGACTTGTACAAGGGCAACACCATGCGCGACGCCGTGCTCCGG
CTTAACGGCACGCTCATGACCGAGATCTACTCCGGCTACAACAGCACCGCCCGCACCGTCGTCTACTGCTGCGAGCCCAT
CTTCGTCGGCGACGACGACGACGCCCCGGACACGCCTGAGAGACCCTGCGTGGAGCAGAACGACCATTCCATCGACATGA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis