Browse Element(s) Details

Os.53313.1.S1_at

Description

gb:AK071942.1
DB_XREF= gi:32981965
TID=Os.53313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013082G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082G08, full insert sequence.
FL= gb:AK071942.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02770	9/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02740	NA	NA	6	+	989762..992282	Zinc knuckle family protein
LOC_Os06g02750	Os.55711.1.S1_at	1/11	6	+	997123..1001420	retrotransposon protein, putative, unclassified
LOC_Os06g02760	OsAffx.27427.1.S1_at	9/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.32596.1.S1_x_at	6/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.8747.3.S1_x_at	3/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.8747.3.S1_at	2/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.54901.1.S1_at	1/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	OsAffx.30177.1.S1_x_at	1/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02770	Os.53313.1.S1_at	9/11	6	+	1008684..1010304	expressed protein
LOC_Os06g02780	Os.9382.1.S1_at	11/11	6	+	1010587..1013689	Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02790	OsAffx.30284.1.S1_at	11/11	6	+	1015825..1018105	hypothetical protein
LOC_Os06g02790	OsAffx.10809.1.S1_at	1/11	6	+	1015825..1018105	hypothetical protein
LOC_Os06g02800	OsAffx.27428.1.S1_at	11/11	6	+	1024099..1024966	expressed protein
LOC_Os06g02810	OsAffx.27429.1.S1_at	11/11	6	+	1027765..1028430	hypothetical protein
LOC_Os06g02820	Os.9332.2.S1_at	1/11	6	+	1029149..1032644	transposon protein, putative, unclassified
LOC_Os06g02820	Os.9332.2.S1_x_at	1/11	6	+	1029149..1032644	transposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53313.1.S1_at--780--905	1	Chr06:1009746..1009770 (25 bp)	TGCATCTGGCTAGCGCGACATCATT	LOC_Os06g02770
Os.53313.1.S1_at--799--945	1	Chr06:1009750..1009774 (25 bp)	TCTGGCTAGCGCGACATCATTTGGT	LOC_Os06g02770
Os.53313.1.S1_at--437--831	1	Chr06:1009753..1009777 (25 bp)	GGCTAGCGCGACATCATTTGGTGGA	LOC_Os06g02770
Os.53313.1.S1_at--485--999	1	Chr06:1009756..1009780 (25 bp)	TAGCGCGACATCATTTGGTGGAGAG	LOC_Os06g02770
Os.53313.1.S1_at--590--49	1	Chr06:1010068..1010092 (25 bp)	ATCGGTGCGCTAGCCGTGGGTCCCT	LOC_Os06g02770
Os.53313.1.S1_at--871--447	2	Chr07:4295852..4296113 (25 bp)	GCCGTGGGTCCCTTTGTTAGTCTAG	NONE
Os.53313.1.S1_at--38--1035	1	NONE	TTAGTCTAGTGGTGGTCGATCCCGC	NONE
Os.53313.1.S1_at--596--1007	1	NONE	TAGTGGTGGTCGATCCCGCTTAGCG	NONE
Os.53313.1.S1_at--72--849	1	Chr06:1010212..1010236 (25 bp)	TGGCTACAACCCTCCAGTGTCATAA	LOC_Os06g02770
Os.53313.1.S1_at--1012--427	1	Chr06:1010222..1010246 (25 bp)	CCTCCAGTGTCATAATCTTGTAATT	LOC_Os06g02770
Os.53313.1.S1_at--786--239	3	Chr06:1010279..1010303 (25 bp)	AAAAAGTTACAAGCATGATTCTTCA	LOC_Os06g02770

Target Sequence

TGCATCTGGCTAGCGCGACATCATTTGGTGGAGAGGTCAAAGACCGGCTTGGCGCAGAGAAGCGCAGTCGATGGCAGCGG
AGGTCGGCTCGGCGCGAGAGGCACGGGCAGCGGAGATGGAGGCCGGCTTGGCGCGAGAGGCGCGTCCGGTGGAGGAGGCC
GGCTTGGCGCAGAGAAGCACGGCCGGCGGTGGAGGAGGCGACCTAGGTGTGAGGAGGAGCTGCTGGTGTGTATGGAGTGG
TCTTCGGCGCACGAAGGCTGGCCGGCGGGGGGTGCCGGTGCAGGGGTCCTATATGTCGGCAGAGCTAGTATGGTGGTGGA
GCATCGGTGCGCTAGCCGTGGGTCCCTTTGTTAGTCTAGTGGTGGTCGATCCCGCTTAGCGGCGGCCGGTCCGGTGCTAG
CCTTCTGCTGGGCTTGTGTGTTGGCGATGTCGGTGTGTGGGTGGTGGTATAATTTTTTCTTTTTCCTGGCTACAACCCTC
CAGTGTCATAATCTTGTAATTTTTTTCTGTTTTATCAATAGAACTCGTTAAAAAAAAAGTTACAAGCATGATTCTTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis