Browse Element(s) Details


OsAffx.15237.1.S1_at

Description tigr:9634.m00193
TID=OsAffx.15237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0287011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein
LOC_Os06g02840OsAffx.27430.1.S1_at11/116+1043888..1044487Harpin-induced protein 1 containing protein
LOC_Os06g02850Os.52461.1.S1_at11/116+1045030..1047727expressed protein
LOC_Os06g02850OsAffx.14477.1.S1_at1/116+1045030..1047727expressed protein
LOC_Os06g02860NANA6+1050966..1051606hypothetical protein
LOC_Os06g02870OsAffx.15237.1.S1_at11/116+1052171..1055079hypothetical protein
LOC_Os06g02880OsAffx.29663.1.S1_at8/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.380.1.S1_at4/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880Os.27345.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.13325.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02910NANA6+1070114..1070593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02920NANA6+1073319..1074518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02930OsAffx.15239.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02930Os.7163.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02940Os.20086.1.S1_at11/116+1078930..1079932expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15237.1.S1_at--539--10771Chr06:1054025..1054049 (25 bp)
TTGAGGAGATGCGACAGCACCCTGT
LOC_Os06g02870
OsAffx.15237.1.S1_at--8--9451Chr06:1053815..1053839 (25 bp)
TCGGCGACGGTCTGACGAAGCTCCG
LOC_Os06g02870
OsAffx.15237.1.S1_at--997--8531Chr06:1053741..1053765 (25 bp)
TGGACGCAGATGTGGTTGCTAACCA
LOC_Os06g02870
OsAffx.15237.1.S1_at--1150--3091Chr06:1052842..1052866 (25 bp)
AATAGCGATGCTCGGTATCTTTCTC
LOC_Os06g02870
OsAffx.15237.1.S1_at--1007--431Chr06:1052826..1052850 (25 bp)
ATCTTTCTCTGTTCCTTGCGGCAGA
LOC_Os06g02870
OsAffx.15237.1.S1_at--165--6391Chr06:1052391..1052806 (25 bp)
GATAGGAGGCTACCCAGATAACCTT
LOC_Os06g02870
OsAffx.15237.1.S1_at--295--4791Chr06:1052294..1052318 (25 bp)
GCTGCCAATTCAGCTTGTAGCTGGT
LOC_Os06g02870
OsAffx.15237.1.S1_at--280--7851Chr06:1052272..1052296 (25 bp)
GGTAGCATACAACCATTTACGTTTA
LOC_Os06g02870
OsAffx.15237.1.S1_at--644--10331Chr06:1052251..1052275 (25 bp)
TTTAATTCAGCAAACCCCACAACAC
LOC_Os06g02870
OsAffx.15237.1.S1_at--972--2591Chr06:1052239..1052263 (25 bp)
AACCCCACAACACAAATCGTAGCAG
LOC_Os06g02870
OsAffx.15237.1.S1_at--1050--3031Chr06:1052225..1052249 (25 bp)
AATCGTAGCAGCAAGAAGGGCCGGC
LOC_Os06g02870
Target Sequence 
TTGAGGAGATGCGACAGCACCCTGTGGCCGGCCCCCGTGCCTCCTCCGGCGACGCCGCCGAACGCCGCCACCTCCCCAAG
CCGGCAGCCGCCGCCAATTGCTCCTCCTCTGCGACGGCGACGCCGCCGAATGCCGCCACCTCCCCGAGCAAGCGGCCACC
GTGGCAGAGGCCACAGCCACCCTCGCAGCGCGACGCCCCTGCCACCGACGTCGGCGACGGTCTGACGAAGCTCCGCGGCG
TCGACGACGGCGGCTATATGGATGTGGTGGAGCTCAGCATGGCATGGACGCAGATGTGGTTGCTAACCATAAGAGTGGTG
GAAGAGATACACAATGGGCCAAGAGTAAAAATAGCGATGCTCGGTATCTTTCTCTGTTCCTTGCGGCAGACGTGGGAACG
GGATGAGCGGATAGGAGGCTACCCAGATAACCTTAAGTTCATCAATACCAAGCTGCCAATTCAGCTTGTAGCTGGTAGCA
TACAACCATTTACGTTTAATTCAGCAAACCCCACAACACAAATCGTAGCAGCAAGAAGGGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis