Browse Element(s) Details


OsAffx.27425.1.S1_at

Description tigr:9634.m00175
TID=OsAffx.27425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02640OsAffx.27423.1.S1_at11/116+936167..939109hypothetical protein
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein
LOC_Os06g02680Os.52461.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02680OsAffx.14477.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02690OsAffx.27425.1.S1_at11/116+962221..962906hypothetical protein
LOC_Os06g02700OsAffx.2147.1.S1_at2/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_x_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.30486.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02710OsAffx.27426.2.S1_s_at11/116+970746..973333hypothetical protein
LOC_Os06g02710OsAffx.27426.2.S1_at11/116+970746..973333hypothetical protein
LOC_Os06g02720NANA6+973706..975161transposon protein, putative, Pong sub-class
LOC_Os06g02730Os.51195.1.S1_at11/116+977317..978766nucleoid DNA-binding protein cnd41, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27425.1.S1_at--1118--4471Chr06:962483..962830 (25 bp)
GCCTGTCGCGCGGAAGCAACAATGA
LOC_Os06g02690
OsAffx.27425.1.S1_at--634--8711Chr06:962480..962500 (21 bp)
TGTCGCGCGGAAGCAACAATGAGAA
LOC_Os06g02690
OsAffx.27425.1.S1_at--889--1431Chr06:962459..962483 (25 bp)
AGAACGACGATGACGCCCCTCTGTG
LOC_Os06g02690
OsAffx.27425.1.S1_at--550--4351Chr06:962416..962440 (25 bp)
CCAGCTCCCGTACGGCGGTGACAGA
LOC_Os06g02690
OsAffx.27425.1.S1_at--749--9291Chr06:962411..962435 (25 bp)
TCCCGTACGGCGGTGACAGAGAGTT
LOC_Os06g02690
OsAffx.27425.1.S1_at--355--8951Chr06:962398..962422 (25 bp)
TGACAGAGAGTTGAGGACCCGCTAC
LOC_Os06g02690
OsAffx.27425.1.S1_at--383--1351Chr06:962394..962418 (25 bp)
AGAGAGTTGAGGACCCGCTACCGCC
LOC_Os06g02690
OsAffx.27425.1.S1_at--254--10691Chr06:962368..962392 (25 bp)
TTCCAGTATTCTCGCCCTTCATCTT
LOC_Os06g02690
OsAffx.27425.1.S1_at--682--4131Chr06:962333..962357 (25 bp)
CGCTGTTCGTCCGTGCAACATTGAG
LOC_Os06g02690
OsAffx.27425.1.S1_at--950--6711Chr06:962329..962353 (25 bp)
GTTCGTCCGTGCAACATTGAGGATC
LOC_Os06g02690
OsAffx.27425.1.S1_at--171--4011Chr06:962322..962346 (25 bp)
CGTGCAACATTGAGGATCGGAGGTC
LOC_Os06g02690
Target Sequence 
GCCTGTCGCGCGGAAGCAACAATGAGAACGACGATGACGCCCCTCTGTGCAGCGGCGGCGACACATCCCAGCTCCCGTAC
GGCGGTGACAGAGAGTTGAGGACCCGCTACCGCCCTTCCAGTATTCTCGCCCTTCATCTTCGCCATCTCCCGCTGTTCGT
CCGTGCAACATTGAGGATCGGAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis