Browse Element(s) Details

Os.51195.1.S1_at

Description

gb:AK061513.1
DB_XREF= gi:32971531
TID=Os.51195.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H02, full insert sequence.
FL= gb:AK061513.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02730	11/11	nucleoid DNA-binding protein cnd41, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02680	Os.52461.1.S1_at	1/11	6	+	958935..961222	hypothetical protein
LOC_Os06g02680	OsAffx.14477.1.S1_at	1/11	6	+	958935..961222	hypothetical protein
LOC_Os06g02690	OsAffx.27425.1.S1_at	11/11	6	+	962221..962906	hypothetical protein
LOC_Os06g02700	OsAffx.2147.1.S1_at	2/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02700	OsAffx.26082.1.S1_at	1/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02700	OsAffx.26082.1.S1_x_at	1/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02700	OsAffx.30486.1.S1_at	1/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02710	OsAffx.27426.2.S1_s_at	11/11	6	+	970746..973333	hypothetical protein
LOC_Os06g02710	OsAffx.27426.2.S1_at	11/11	6	+	970746..973333	hypothetical protein
LOC_Os06g02720	NA	NA	6	+	973706..975161	transposon protein, putative, Pong sub-class
LOC_Os06g02730	Os.51195.1.S1_at	11/11	6	+	977317..978766	nucleoid DNA-binding protein cnd41, putative, expressed
LOC_Os06g02740	NA	NA	6	+	989762..992282	Zinc knuckle family protein
LOC_Os06g02750	Os.55711.1.S1_at	1/11	6	+	997123..1001420	retrotransposon protein, putative, unclassified
LOC_Os06g02760	OsAffx.27427.1.S1_at	9/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.32596.1.S1_x_at	6/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.8747.3.S1_x_at	3/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.8747.3.S1_at	2/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	Os.54901.1.S1_at	1/11	6	+	1002544..1005230	hypothetical protein
LOC_Os06g02760	OsAffx.30177.1.S1_x_at	1/11	6	+	1002544..1005230	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0003677	molecular_function	DNA binding
GO:0004194	molecular_function	pepsin A activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51195.1.S1_at--746--497	1	Chr06:977740..977764 (25 bp)	GCATGCCAGGGTTCATCGGTAACGT	LOC_Os06g02730
Os.51195.1.S1_at--935--49	1	Chr06:977726..977750 (25 bp)	ATCGGTAACGTTCAGCAGCGCACGC	LOC_Os06g02730
Os.51195.1.S1_at--280--519	2	Chr06:1061640..1061664 (25 bp)	GCAAGGCCATTCGATTCCGGAGCGC	NONE
Os.51195.1.S1_at--186--453	1	Chr06:977654..977678 (25 bp)	GCCGCCTGCTAAATTAATTTGCTTG	LOC_Os06g02730
Os.51195.1.S1_at--67--493	1	Chr06:977630..977654 (25 bp)	GCTTGCCAAACTAGCTTGGTTTATT	LOC_Os06g02730
Os.51195.1.S1_at--1023--975	1	Chr06:977572..977596 (25 bp)	TAATCGCTGTTTATCTTCTCATGAC	LOC_Os06g02730
Os.51195.1.S1_at--209--895	1	Chr06:977551..977575 (25 bp)	TGACATGTTTATCCTACAGTACTAG	LOC_Os06g02730
Os.51195.1.S1_at--178--233	1	Chr06:977494..977518 (25 bp)	AAAGTAGCTGGCTTGCAGCATGCAT	LOC_Os06g02730
Os.51195.1.S1_at--48--959	1	Chr06:977400..977424 (25 bp)	TCTTGATGTCATTTGTGCTCGTGTG	LOC_Os06g02730
Os.51195.1.S1_at--658--607	2	Chr06:1061272..1061296 (25 bp)	GAGTTATGTCCATCTTATCAAGTCA	NONE
Os.51195.1.S1_at--480--115	2	Chr06:977342..977366 (25 bp)	AGTCATGTACTACTTTTCCCATATC	LOC_Os06g02730

Target Sequence

GCATGCCAGGGTTCATCGGTAACGTTCAGCAGCGCACGCTCGAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTC
CGGAGCGCCGCCTGCTAAATTAATTTGCTTGCTTGCCAAACTAGCTTGGTTTATTAATTAGCTTGGTTGATGAAATAATT
AGTCAATTTAATCGCTGTTTATCTTCTCATGACATGTTTATCCTACAGTACTAGTAGAGCATCTATGATCTCTATGGAAA
GGGATTAAAGTAGCTGGCTTGCAGCATGCATTGTCTGCTAAAGTTTAGGCTAGCTAGCAAAGCTCTTTTGTTTATGTTGT
CTGCAATAATTAGTTAATTATCTTGATGTCATTTGTGCTCGTGTGAGATTGTAATATCGAGTTATGTCCATCTTATCAAG
TCATGTACTACTTTTCCCATATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis