Browse Element(s) Details


Os.53995.1.S1_at

Description gb:AK101191.1
DB_XREF= gi:32986400
TID=Os.53995.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030G03, full insert sequence.
FL= gb:AK101191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4497011/11Auxin efflux carrier component 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44940OsAffx.1353.1.S1_x_at1/116+27178432..27178986transposon protein, putative, unclassified
LOC_Os06g44950NANA6+27183368..27189523retrotransposon protein, putative, unclassified
LOC_Os06g44960NANA6+27190152..27193442retrotransposon protein, putative, unclassified
LOC_Os06g44970Os.53995.1.S1_at11/116+27199811..27203614Auxin efflux carrier component 4, putative, expressed
LOC_Os06g44980Os.57188.1.S1_at11/116+27208779..27209290expressed protein
LOC_Os06g44990NANA6+27213547..27214813transposon protein, putative, Pong sub-class
LOC_Os06g45010OsAffx.27426.2.S1_s_at11/116+27215184..27218843expressed protein
LOC_Os06g45010OsAffx.27426.2.S1_at4/116+27215184..27218843expressed protein
LOC_Os06g45000Os.15777.1.S1_at10/116+27218540..27222020Ubiquitin-conjugating enzyme E2S, putative, expressed
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0009958biological_processpositive gravitropism
GO:0048364biological_processroot development
GO:0009925cellular_componentbasal plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53995.1.S1_at--61--8231Chr06:27202834..27202858 (25 bp)
GGCAAGACCGTTGCGACATTTGCAA
LOC_Os06g44970
Os.53995.1.S1_at--36--10751Chr06:27202873..27202897 (25 bp)
TTGACTGGTCCAGCTGTTATTGCAG
LOC_Os06g44970
Os.53995.1.S1_at--89--10231Chr06:27202890..27202914 (25 bp)
TATTGCAGCTACTTCCATTGCCATT
LOC_Os06g44970
Os.53995.1.S1_at--972--8031Chr06:27202924..27202948 (25 bp)
GGAGTACTCTTGCATGTTGCCATTG
LOC_Os06g44970
Os.53995.1.S1_at--318--931Chr06:27203073..27203097 (25 bp)
AGGCAGCACTTCCACAAGGCATTGT
LOC_Os06g44970
Os.53995.1.S1_at--1145--3591Chr06:27203092..27203116 (25 bp)
CATTGTCCCGTTTGTGTTTGCCAAG
LOC_Os06g44970
Os.53995.1.S1_at--602--9251Chr06:27203131..27203152 (22 bp)
TCCTCAAATACTTAGCACAGCGGTT
LOC_Os06g44970
Os.53995.1.S1_at--473--10211Chr06:27203244..27203268 (25 bp)
TATTTTTGGGATGCTCATCGCGCTT
LOC_Os06g44970
Os.53995.1.S1_at--1156--6471Chr06:27203277..27203301 (25 bp)
GATACTCTACTATGTGCTTCTTGGG
LOC_Os06g44970
Os.53995.1.S1_at--28--8831Chr06:27203388..27203412 (25 bp)
TGATATGGGCTTTCTTGAAGACCTG
LOC_Os06g44970
Os.53995.1.S1_at--829--8151Chr06:27203481..27203505 (25 bp)
GGAAAGACACCCCTTGATTACAATT
LOC_Os06g44970
Target Sequence 
GGCAAGACCGTTGCGACATTTGCAATGGCAGTGAGGTTCTTGACTGGTCCAGCTGTTATTGCAGCTACTTCCATTGCCAT
TGGGCTCAGGGGAGTACTCTTGCATGTTGCCATTGTTCAGGCAGCACTTCCACAAGGCATTGTCCCGTTTGTGTTTGCCA
AGGAGTACAATTGCCATCCTCAAATACTTAGCACAGCGGTTATTTTTGGGATGCTCATCGCGCTTCCGATCACGATACTC
TACTATGTGCTTCTTGGGATATAGTGTTCTTGAAGAAGGCAAAAAAGAAAGAGTAGGGAAAAAAATAGGATTCTAGGTTT
CTAGAGGAAAATGCAAAAGAAATATGATATGGGCTTTCTTGAAGACCTGAAGAACTACCAGAGCTGAAGAATAGGGAAAT
GAGATCAAGTAGGATCCTAGCTAGAGAGAAATGCAAAGGAAAGACACCCCTTGATTACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis