Browse Element(s) Details


Os.15777.1.S1_at

Description gb:AK058614.1
DB_XREF= gi:32968632
TID=Os.15777.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B01, full insert sequence.
FL= gb:AK058614.1 gb:AK121998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4500010/11Ubiquitin-conjugating enzyme E2S, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44970Os.53995.1.S1_at11/116+27199811..27203614Auxin efflux carrier component 4, putative, expressed
LOC_Os06g44980Os.57188.1.S1_at11/116+27208779..27209290expressed protein
LOC_Os06g44990NANA6+27213547..27214813transposon protein, putative, Pong sub-class
LOC_Os06g45010OsAffx.27426.2.S1_s_at11/116+27215184..27218843expressed protein
LOC_Os06g45010OsAffx.27426.2.S1_at4/116+27215184..27218843expressed protein
LOC_Os06g45000Os.15777.1.S1_at10/116+27218540..27222020Ubiquitin-conjugating enzyme E2S, putative, expressed
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed
LOC_Os06g45030Os.54363.1.S1_at11/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030OsAffx.17848.4.S1_x_at1/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15777.1.S1_at--126--5111Chr06:27221283..27221469 (25 bp)
GCACGGCATGCAAGGCTATACACTA
LOC_Os06g45000
Os.15777.1.S1_at--860--9991Chr06:27221468..27221492 (25 bp)
TAGCATCCATGCACTTAAACCCAAG
LOC_Os06g45000
Os.15777.1.S1_at--287--5871Chr06:27221504..27221528 (25 bp)
GAGCGGGACTATTTCTGAATCAACC
LOC_Os06g45000
Os.15777.1.S1_at--1048--3591Chr06:27221578..27221602 (25 bp)
CATTGGGTCCAGCAGCATTATCTAC
LOC_Os06g45000
Os.15777.1.S1_at--608--3591Chr06:27221593..27221617 (25 bp)
CATTATCTACCTCCACTGCAAATAA
LOC_Os06g45000
Os.15777.1.S1_at--1089--3571Chr06:27221620..27221644 (25 bp)
CATTTGGCTCTAATTTGCAGGATCA
LOC_Os06g45000
Os.15777.1.S1_at--185--10611Chr06:27221657..27221681 (25 bp)
TTCTGATCCTGCCTTGGGAGCATCA
LOC_Os06g45000
Os.15777.1.S1_at--456--5931Chr06:27221674..27221698 (25 bp)
GAGCATCAGCAGTACCCAAGAAGGA
LOC_Os06g45000
Os.15777.1.S1_at--51--4851Chr06:27221702..27221726 (25 bp)
GCTACATGCTGTGAAAGCTCCGGTT
LOC_Os06g45000
Os.15777.1.S1_at--851--8751Chr06:27221948..27221972 (25 bp)
TGTACCATACTGTCTGTGCAATATC
LOC_Os06g45000
Os.15777.1.S1_at--485--10311Chr06:27221997..27222021 (25 bp)
TTTCTGTCGTTGATTGCCCCTGTGA
NONE
Target Sequence 
GCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATC
AACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCT
CCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCA
GTACCCAAGAAGGATGGGCTACATGCTGTGAAAGCTCCGGTTGAGAAGAAGAAGATTGATGCGAGGAAGAAGAGCTTGAA
GAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAG
ATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGA
AGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACTTGTNTTTTCTGTC
GTTGATTGCCCCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis