Browse Element(s) Details


OsAffx.15932.1.S1_at

Description tigr:9634.m04366
TID=OsAffx.15932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4504010/11B-box zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed
LOC_Os06g45030Os.54363.1.S1_at11/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030OsAffx.17848.4.S1_x_at1/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040OsAffx.15932.1.S1_at10/116+27252386..27254042B-box zinc finger family protein
LOC_Os06g45050Os.54880.1.S1_at11/116+27256070..27260258Clathrin assembly protein, putative, expressed
LOC_Os06g45060Os.53705.1.S1_at11/116+27260314..27261597expressed protein
LOC_Os06g45070OsAffx.28110.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_x_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45080Os.25345.2.S1_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080Os.25345.1.S1_x_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090Os.46304.1.S1_a_at11/116+27270985..27274167expressed protein
LOC_Os06g45100Os.53365.1.S1_at11/116+27274529..27277847cryptochrome dash, putative, expressed
LOC_Os06g45110Os.17942.1.S1_at11/116+27278953..27283979expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15932.1.S1_at--411--5771Chr06:27253037..27253061 (25 bp)
GACGAGTGCTCGTGTTCTGAAGCGC
LOC_Os06g45040
OsAffx.15932.1.S1_at--186--1131Chr06:27253041..27253065 (25 bp)
AGTGCTCGTGTTCTGAAGCGCCCAA
LOC_Os06g45040
OsAffx.15932.1.S1_at--761--10531Chr06:27253051..27253075 (25 bp)
TTCTGAAGCGCCCAACGCCTTGGGT
LOC_Os06g45040
OsAffx.15932.1.S1_at--738--2591Chr06:27253064..27253084 (21 bp)
AACGCCTTGGGTGGCCCACATAGTT
LOC_Os06g45040
OsAffx.15932.1.S1_at--467--8611NONE
TGGGTGGCCCACATAGTTTCCGTAC
NONE
OsAffx.15932.1.S1_at--819--2071Chr06:27253917..27253937 (21 bp)
ACATAGTTTCCGTACCACCGAAGCA
LOC_Os06g45040
OsAffx.15932.1.S1_at--221--5391Chr06:27253932..27253956 (25 bp)
GAAGCACCGGCTTTCTCGTTCATTG
LOC_Os06g45040
OsAffx.15932.1.S1_at--376--4891Chr06:27253941..27253965 (25 bp)
GCTTTCTCGTTCATTGCGTCAGTAA
LOC_Os06g45040
OsAffx.15932.1.S1_at--649--4031Chr06:27253948..27253972 (25 bp)
CGTTCATTGCGTCAGTAAGATGGAA
LOC_Os06g45040
OsAffx.15932.1.S1_at--713--8191Chr06:27253969..27253993 (25 bp)
GGAAGAAGAGGCTGCTCATCGTCCT
LOC_Os06g45040
OsAffx.15932.1.S1_at--152--9611Chr06:27253984..27254008 (25 bp)
TCATCGTCCTCGCTGAGTACAAATA
LOC_Os06g45040
Target Sequence 
GACGAGTGCTCGTGTTCTGAAGCGCCCAACGCCTTGGGTGGCCCACATAGTTTCCGTACCACCGAAGCACCGGCTTTCTC
GTTCATTGCGTCAGTAAGATGGAAGAAGAGGCTGCTCATCGTCCTCGCTGAGTACAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis