Browse Element(s) Details


Os.53705.1.S1_at

Description gb:AK099401.1
DB_XREF= gi:32984610
TID=Os.53705.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E16, full insert sequence.
FL= gb:AK099401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4506011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45030Os.54363.1.S1_at11/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030OsAffx.17848.4.S1_x_at1/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040OsAffx.15932.1.S1_at10/116+27252386..27254042B-box zinc finger family protein
LOC_Os06g45050Os.54880.1.S1_at11/116+27256070..27260258Clathrin assembly protein, putative, expressed
LOC_Os06g45060Os.53705.1.S1_at11/116+27260314..27261597expressed protein
LOC_Os06g45070OsAffx.28110.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_x_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45080Os.25345.2.S1_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080Os.25345.1.S1_x_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090Os.46304.1.S1_a_at11/116+27270985..27274167expressed protein
LOC_Os06g45100Os.53365.1.S1_at11/116+27274529..27277847cryptochrome dash, putative, expressed
LOC_Os06g45110Os.17942.1.S1_at11/116+27278953..27283979expressed protein
LOC_Os06g45120Os.11821.1.S2_at11/116+27285311..27291850Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120Os.11821.1.S1_at10/116+27285311..27291850Vacuolar ATP synthase catalytic subunit A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53705.1.S1_at--226--9031Chr06:27261052..27261074 (23 bp)
TGCACGACCTACTTCATCGATGGAC
LOC_Os06g45060
Os.53705.1.S1_at--892--3651Chr06:27260585..27261063 (25 bp)
CTTCATCGATGGACACTTTCCGGAT
LOC_Os06g45060
Os.53705.1.S1_at--144--2051Chr06:27260571..27260595 (25 bp)
ACTTTCCGGATGAAGTGGAGCGCTC
LOC_Os06g45060
Os.53705.1.S1_at--102--5891Chr06:27260554..27260578 (25 bp)
GAGCGCTCGGATGTCATTCCAGCTG
LOC_Os06g45060
Os.53705.1.S1_at--110--3171Chr06:27260514..27260538 (25 bp)
AATTCCAGCTGAAGATGCATTAGTG
LOC_Os06g45060
Os.53705.1.S1_at--154--7531Chr06:27260492..27260516 (25 bp)
GTGGAAGCCAAATCAGCCGAAGACG
LOC_Os06g45060
Os.53705.1.S1_at--736--5351Chr06:27260474..27260498 (25 bp)
GAAGACGAATTCAAGCTTTGCCTGT
LOC_Os06g45060
Os.53705.1.S1_at--283--4891Chr06:27260460..27260484 (25 bp)
GCTTTGCCTGTTTCATGTGCTAGTA
LOC_Os06g45060
Os.53705.1.S1_at--805--8691Chr06:27260445..27260469 (25 bp)
TGTGCTAGTATTTGTTTTCTGCTGT
LOC_Os06g45060
Os.53705.1.S1_at--1007--5591Chr06:27260401..27260425 (25 bp)
GAAATTCATGAGCTACTGTGAGGGA
LOC_Os06g45060
Os.53705.1.S1_at--97--951Chr06:27260366..27260390 (25 bp)
AGGAATCCATGTAGCTCATCTGGTT
LOC_Os06g45060
Target Sequence 
TGCACGACCTACTTCATCGATGGACACTTTCCGGATGAAGTGGAGCGCTCGGATGTCATTCCAGCTGAAGATGAATGAGC
GAAATTCCAGCTGAAGATGCATTAGTGGAAGCCAAATCAGCCGAAGACGAATTCAAGCTTTGCCTGTTTCATGTGCTAGT
ATTTGTTTTCTGCTGTTGTACAAATGTAGAATCCAGAAATTCATGAGCTACTGTGAGGGAATAAAAACGCAGGAATCCAT
GTAGCTCATCTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis