Browse Element(s) Details

Os.11821.1.S2_at

Description

gb:AK069821.1
DB_XREF= gi:32979845
TID=Os.11821.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.11821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028L13, full insert sequence.
FL= gb:AK061925.1 gb:AK069821.1 gb:AK071775.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45120	11/11	Vacuolar ATP synthase catalytic subunit A, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45060	Os.53705.1.S1_at	11/11	6	+	27260314..27261597	expressed protein
LOC_Os06g45070	OsAffx.28110.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_x_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45080	Os.25345.2.S1_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080	Os.25345.1.S1_x_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090	Os.46304.1.S1_a_at	11/11	6	+	27270985..27274167	expressed protein
LOC_Os06g45100	Os.53365.1.S1_at	11/11	6	+	27274529..27277847	cryptochrome dash, putative, expressed
LOC_Os06g45110	Os.17942.1.S1_at	11/11	6	+	27278953..27283979	expressed protein
LOC_Os06g45120	Os.11821.1.S2_at	11/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120	Os.11821.1.S1_at	10/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130	Os.50560.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45130	OsAffx.28111.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45140	Os.1503.1.S1_at	11/11	6	+	27298917..27301107	bZIP transcription factor family protein, expressed
LOC_Os06g45150	OsAffx.15933.1.S1_s_at	11/11	6	+	27302502..27303231	Pollen allergen family protein, expressed
LOC_Os06g45160	Os.22589.1.S1_at	11/11	6	+	27305729..27306412	Pollen allergen family protein, expressed
LOC_Os06g45170	NA	NA	6	+	27308513..27313034	retrotransposon protein, putative, unclassified
LOC_Os06g45180	NA	NA	6	+	27315963..27316607	Pollen allergen family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0007030	biological_process	Golgi organization and biogenesis
GO:0009555	biological_process	male gametophyte development
GO:0015992	biological_process	proton transport
GO:0005739	cellular_component	mitochondrion
GO:0005524	molecular_function	ATP binding
GO:0046933	molecular_function	hydrogen-transporting ATP synthase activity, rotational mechanism

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11821.1.S2_at--597--123	1	Chr06:27287003..27287027 (25 bp)	AGTTCTGTCCATTCTACAAGTCTGT	LOC_Os06g45120
Os.11821.1.S2_at--757--771	1	Chr06:27285837..27285860 (24 bp)	GGGTGATCTATTTTATCGCCTAGTA	LOC_Os06g45120
Os.11821.1.S2_at--130--129	1	Chr06:27285683..27285707 (25 bp)	AGATGTCCTAGTCGCAAAATTCCAG	LOC_Os06g45120
Os.11821.1.S2_at--566--691	1	Chr06:27285653..27285677 (25 bp)	GTATGATGACCTCACAACCGGATTC	LOC_Os06g45120
Os.11821.1.S2_at--660--213	1	Chr06:27285638..27285662 (25 bp)	AACCGGATTCCGCAACCTAGAAGAT	LOC_Os06g45120
Os.11821.1.S2_at--398--17	1	Chr06:27285525..27285549 (25 bp)	ATTTTGCTTCGCGTGAGGTTGTAGA	LOC_Os06g45120
Os.11821.1.S2_at--71--43	2	Chr07:25941763..25941788 (23 bp)	ATCATCATATTTTCCTTCTGCATCG	NONE
Os.11821.1.S2_at--137--219	1	Chr06:27285457..27285481 (25 bp)	ACACTGCTGCTGCTTTTTGTAGCTT	LOC_Os06g45120
Os.11821.1.S2_at--460--381	1	Chr06:27285422..27285446 (25 bp)	CTCCGGTGCTCGATGAAGGCATTCT	LOC_Os06g45120
Os.11821.1.S2_at--938--529	1	Chr06:27285408..27285432 (25 bp)	GAAGGCATTCTTTTTGGTGTACAAT	LOC_Os06g45120
Os.11821.1.S2_at--26--707	1	Chr06:27285373..27285397 (25 bp)	GTAAGATACCTGTGCACATGTTGAT	LOC_Os06g45120

Target Sequence

AGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGGCTGTGGAG
CGNGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTCATAAAGCATCGTATGGGTGATCTATTTTATCGCCTAGT
ATCTCAAAAGTTTGAGGACCCTGCAGAGGGTGAAGATGTCCTAGTCGCAAAATTCCAGAAATTGTATGATGACCTCACAA
CCGGATTCCGCAACCTAGAAGATGAAGCTAGGTGAAGTGCTGTAAATTGAGGATCACATTCGTGTAAACAATAAAATATC
ACCAGATATTCGAAGCGAGTTGGGGCAATTTATTTTGCTTCGCGTGAGGTTGTAGATGTGAATTACGTTTCAGAATCATC
ATATTTTCCTTCTGCATCGACACTGCTGCTGCTTTTTGTAGCTTCCNTGTTTGNCCTCCGGTGCTCGATGAAGGCATTCT
TTTTGGTGTACAATTATTTATATTGTAAGATACCTGTGCACATGTTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis