Browse Element(s) Details

OsAffx.15933.1.S1_s_at

Description

tigr:9634.m04381
TID=OsAffx.15933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen allergen, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45150	11/11	Pollen allergen family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45100	Os.53365.1.S1_at	11/11	6	+	27274529..27277847	cryptochrome dash, putative, expressed
LOC_Os06g45110	Os.17942.1.S1_at	11/11	6	+	27278953..27283979	expressed protein
LOC_Os06g45120	Os.11821.1.S2_at	11/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120	Os.11821.1.S1_at	10/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130	Os.50560.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45130	OsAffx.28111.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45140	Os.1503.1.S1_at	11/11	6	+	27298917..27301107	bZIP transcription factor family protein, expressed
LOC_Os06g45150	OsAffx.15933.1.S1_s_at	11/11	6	+	27302502..27303231	Pollen allergen family protein, expressed
LOC_Os06g45160	Os.22589.1.S1_at	11/11	6	+	27305729..27306412	Pollen allergen family protein, expressed
LOC_Os06g45170	NA	NA	6	+	27308513..27313034	retrotransposon protein, putative, unclassified
LOC_Os06g45180	NA	NA	6	+	27315963..27316607	Pollen allergen family protein, expressed
LOC_Os06g45190	NA	NA	6	+	27322841..27323414	Pollen allergen family protein, expressed
LOC_Os06g45200	OsAffx.28113.1.S1_at	11/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	OsAffx.28113.1.S1_x_at	10/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.50182.1.S1_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.24196.1.A1_x_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.25409.1.S1_x_at	1/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45210	OsAffx.28114.1.S1_x_at	10/11	6	+	27328134..27329359	Pollen allergen family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15933.1.S1_s_at--646--187	1	Chr06:27302913..27302937 (25 bp)	ACGATGTCATCCCTGAAGCCTTCAA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--329--979	1	Chr06:27302873..27302897 (25 bp)	TAAGAGTGGCATCCAGCTCAAGTAA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--824--849	1	Chr06:27302867..27302891 (25 bp)	TGGCATCCAGCTCAAGTAACGTACA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--834--705	1	Chr06:27302852..27302876 (25 bp)	GTAACGTACACTTGTGCTCTTGCAT	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--657--207	1	Chr06:27302843..27302867 (25 bp)	ACTTGTGCTCTTGCATTGGATCGCA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--1124--481	1	Chr06:27302837..27302861 (25 bp)	GCTCTTGCATTGGATCGCATGGAAA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--46--413	1	Chr06:27302822..27302846 (25 bp)	CGCATGGAAATTGTTGATCTCTAAA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--727--77	1	Chr06:27302701..27302725 (25 bp)	ATGTGCACATGATTTTGAATACGTT	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--245--523	1	Chr06:27302685..27302709 (25 bp)	GAATACGTTGTTTATGTAGGACTTA	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--258--175	1	Chr06:27302628..27302652 (25 bp)	ACCGAGACGGTTGTTTACATTTGAT	LOC_Os06g45150
OsAffx.15933.1.S1_s_at--114--1005	1	Chr06:27302573..27302597 (25 bp)	TAGATCAATGATGTTCATCTATCAT	LOC_Os06g45150

Target Sequence

ACGATGTCATCCCTGAAGCCTTCAAGGTCGGCTCCGTCTATAAGAGTGGCATCCAGCTCAAGTAACGTACACTTGTGCTC
TTGCATTGGATCGCATGGAAATTGTTGATCTCTAAATAATTCTTTTTTAAAAAAAGAGAGATCGAGTCTGCCTGTGCGCA
AGCCAATAATTATTTTTTATGGTCCTTCCCGCATATTGTTGTGAAGCTATATATGTGCACATGATTTTGAATACGTTGTT
TATGTAGGACTTATGGTAAAAAGGTATATTATTTGGTCAGCCTTCACCGAGACGGTTGTTTACATTTGATTTTTCCAATG
TTTTAATACATATGTATATCTAGATCAATGATGTTCATCTATCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis