Browse Element(s) Details


OsAffx.28082.1.S1_at

Description tigr:9634.m04203
TID=OsAffx.28082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4352011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28082.1.S1_at--853--8891Chr06:26162679..26162703 (25 bp)
TGAGATCACAGAGGCGGCTTCCGGT
LOC_Os06g43520
OsAffx.28082.1.S1_at--977--7731Chr06:26162538..26162664 (25 bp)
GGTGGTCTCTCCTAAAGTTGAATCT
LOC_Os06g43520
OsAffx.28082.1.S1_at--1036--2911Chr06:26162456..26162480 (25 bp)
AAGGAGATGTCCTCTGCTCTAGATT
LOC_Os06g43520
OsAffx.28082.1.S1_at--728--6651Chr06:26162429..26162453 (25 bp)
GTTGATGCCAAGAACCGAGCCTTTA
LOC_Os06g43520
OsAffx.28082.1.S1_at--124--111Chr06:26162391..26162415 (25 bp)
ATTCGAGAAATCCACTGCAGCATGT
LOC_Os06g43520
OsAffx.28082.1.S1_at--427--6791Chr06:26162200..26162224 (25 bp)
GTTAGGAGGCCTTCTCGAACAGAAC
LOC_Os06g43520
OsAffx.28082.1.S1_at--237--1431Chr06:26162180..26162204 (25 bp)
AGAACGGTGTCCTGAAGCGCGCATT
LOC_Os06g43520
OsAffx.28082.1.S1_at--804--1651Chr06:26162165..26162189 (25 bp)
AGCGCGCATTTCTTAAACAGCACAA
LOC_Os06g43520
OsAffx.28082.1.S1_at--421--8711Chr06:26161942..26161966 (25 bp)
TGTCCTGTCATTACATCTTGCCCAA
LOC_Os06g43520
OsAffx.28082.1.S1_at--189--2671Chr06:26161919..26161943 (25 bp)
AAGCGACGCAACACGGCATTATCTC
LOC_Os06g43520
OsAffx.28082.1.S1_at--590--5191Chr06:26161886..26161910 (25 bp)
GCAATCCAGACGTCTTCTAGGTGAT
LOC_Os06g43520
Target Sequence 
TGAGATCACAGAGGCGGCTTCCGGTGATACAGGAAACGAGGTGGTCTCTCCTAAAGTTGAATCTGATTTGTCAGCGATGA
ACATCCCATCCAATGGGTCTGAATGGGCTGAGCTAGTTGTCAAGGAGATGTCCTCTGCTCTAGATTTGGTTGATGCCAAG
AACCGAGCCTTTAGGTTACTTGACCTATTCGAGAAATCCACTGCAGCATGTATCAGTCCAGTTGAAATGCGGAAGATGCG
CGAGGAACACAAGATACTGAAGCTGATGTTAGGAGGCCTTCTCGAACAGAACGGTGTCCTGAAGCGCGCATTTCTTAAAC
AGCACAATCGGCTCAATGATTATGAAAAGAAAATGTCGCAGGAGCGGTCGCAGATTATCGACACGTACGAAAAGGAGATA
AAGGCGCTACAGCATAGGAATTATGTCCTGTCATTACATCTTGCCCAAGCGACGCAACACGGCATTATCTCCGGCCATTG
CAATCCAGACGTCTTCTAGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis