Browse Element(s) Details


OsAffx.15910.1.S1_at

Description tigr:9634.m04198
TID=OsAffx.15910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4348011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15910.1.S1_at--198--1171Chr06:26137759..26137783 (25 bp)
AGTTACCATGGCTTTTCCACAAAAT
LOC_Os06g43480
OsAffx.15910.1.S1_at--320--8491Chr06:26137801..26137825 (25 bp)
TGGCTTCATGGTACACAGGACTTGT
LOC_Os06g43480
OsAffx.15910.1.S1_at--107--1652Chr06:26137848..26137872 (25 bp)
AGCGACGACGCTACAATGGATTATG
LOC_Os06g43480
OsAffx.15910.1.S1_at--503--2591Chr06:26137925..26137949 (25 bp)
AACGAGTATTCATTGGTCAGCACAA
LOC_Os06g43480
OsAffx.15910.1.S1_at--217--9891Chr06:26137987..26138011 (25 bp)
TACTTGGTCATCAAAGAGGCGCTCC
LOC_Os06g43480
OsAffx.15910.1.S1_at--159--1991Chr06:26138034..26138058 (25 bp)
ACTGCTGCCACGAGAGTGTCGAACT
LOC_Os06g43480
OsAffx.15910.1.S1_at--869--6011Chr06:26138045..26138069 (25 bp)
GAGAGTGTCGAACTACTTGCCAAGT
LOC_Os06g43480
OsAffx.15910.1.S1_at--714--4311Chr06:26138058..26138082 (25 bp)
TACTTGCCAAGTGCTAGGGTTCGAT
LOC_Os06g43480
OsAffx.15910.1.S1_at--404--1131Chr06:26138100..26138124 (25 bp)
AGTGCTCGTGAATATGTGGGCTATA
LOC_Os06g43480
OsAffx.15910.1.S1_at--1133--7651Chr06:26138129..26138153 (25 bp)
GGGATCCTAAGTACTGGGACCAATC
LOC_Os06g43480
OsAffx.15910.1.S1_at--487--9991Chr06:26138291..26138315 (25 bp)
TAGCGAGTCTCTTATATCACTTTGA
LOC_Os06g43480
Target Sequence 
AGTTACCATGGCTTTTCCACAAAATGTAGTTACCTGAAAATTTGGCTTCATGGTACACAGGACTTGTTCAATGGGGGCAG
TGAGACGACAGCGACGACGCTACAATGGATTATGGCTAAACTCATGAGAAACCCAAGAGTTATGCAAAAAGCACAAGATG
AGGTCCAACGAGTATTCATTGGTCAGCACAAAGTCACAGAAGAAAACCTAAGCAATTTGAGTTACATGTACTTGGTCATC
AAAGAGGCGCTCCGGCTGCACCCGCCAAGACCACCACTGCTGCCACGAGAGTGTCGAACTACTTGCCAAGTGCTAGGGTT
CGATGTGCCTAAAGGAACAATAGTGCTCGTGAATATGTGGGCTATAAATAGGGATCCTAAGTACTGGGACCAATCAGAAG
AGTTTATACTAGAGAGATTTGAGCATGTTGATATCAATTTCAAAGGGATGAACTTTGAGTATATGCCGTTTGGAGCGGGA
CGACGGATGTGCCCTGGGATGGCATTTGGTCTAGTGAATTTAGAGCTCGTACTAGCGAGTCTCTTATATCACTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis