Browse Element(s) Details


OsAffx.28080.1.S1_at

Description tigr:9634.m04200
TID=OsAffx.28080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28080.1.S1_at--135--7591Chr06:26153712..26153736 (25 bp)
GGGCTACATTTCTCCAGTCCCGATC
LOC_Os06g43500
OsAffx.28080.1.S1_at--39--3452Chr12:17660361..17660381 (21 bp)
CAGTCCCGATCACCACGTGGTGAAT
NONE
OsAffx.28080.1.S1_at--1154--10292Chr06:26153674..26153698 (25 bp)
TTTATCCCCGTGGTTACAGCGGACG
LOC_Os06g43500
OsAffx.28080.1.S1_at--454--4151Chr06:26153669..26153693 (25 bp)
CCCCGTGGTTACAGCGGACGACGTG
LOC_Os06g43500
OsAffx.28080.1.S1_at--329--7311Chr06:26153539..26153563 (25 bp)
GTGCTCTCGGCAGCGAGTCGACGGA
LOC_Os06g43500
OsAffx.28080.1.S1_at--328--8091Chr06:26153513..26153537 (25 bp)
GGACGGGACAACACCCGTGCCTGTG
LOC_Os06g43500
OsAffx.28080.1.S1_at--320--7291Chr06:26153497..26153521 (25 bp)
GTGCCTGTGCCACGCAAGAGGAGGC
LOC_Os06g43500
OsAffx.28080.1.S1_at--404--8371Chr06:26153469..26153493 (25 bp)
GGCGTGCGCGTTTCGAGCAGTGGTG
LOC_Os06g43500
OsAffx.28080.1.S1_at--579--3451Chr06:26153452..26153476 (25 bp)
CAGTGGTGCTCCTGGTGGCTAGGGA
LOC_Os06g43500
OsAffx.28080.1.S1_at--88--6131Chr06:26153392..26153416 (25 bp)
GAGTGGCGAACTGGCGATGCACGCA
LOC_Os06g43500
OsAffx.28080.1.S1_at--560--4151Chr06:26153360..26153384 (25 bp)
CGCCGCAACCGAGAGCAGGAGGACT
LOC_Os06g43500
Target Sequence 
GGGCTACATTTCTCCAGTCCCGATCACCACGTGGTGAATTTATCCCCGTGGTTACAGCGGACGACGTGGCAGCGGACGGC
GTGCTGGCGAGTGGCGATGGAGGGCGTTGGTGGCTCCCGGCGGCGCGACGACAGCCGCAGGCGCTGCGCGGCGCGACACC
GGCGCTCTCGGCGGTGCTCTCGGCAGCGAGTCGACGGAGGGACGGGACAACACCCGTGCCTGTGCCACGCAAGAGGAGGC
GGCGGCGTGCGCGTTTCGAGCAGTGGTGCTCCTGGTGGCTAGGGAGTGGCAGTGCACGGCGGTGTGCCTGGTGGCTGGCA
GAGTGGCGAACTGGCGATGCACGCAGGTGCAGCGCCGCAACCGAGAGCAGGAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis