Browse Element(s) Details


OsAffx.11952.1.S1_at

Description tigr:9630.m00846
TID=OsAffx.11952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0933010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09270Os.24882.1.S1_s_at11/112+4774333..4776354Cytochrome P450 family protein, expressed
LOC_Os02g09280OsAffx.21870.2.S1_x_at3/112+4779347..4780268hypothetical protein
LOC_Os02g09280OsAffx.21870.3.S1_x_at1/112+4779347..4780268hypothetical protein
LOC_Os02g09290OsAffx.24172.1.S1_at11/112+4785232..4787038Cytochrome P450 71D10, putative, expressed
LOC_Os02g09300OsAffx.30486.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09300OsAffx.9762.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09310OsAffx.24172.2.S1_at11/112+4791454..4793238Cytochrome P450 family protein
LOC_Os02g09320OsAffx.24173.1.S1_at11/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09320Os.52428.1.S1_x_at1/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11952.1.S1_at--531--5831NONE
GAGCCCCACCGATCTCTTTAGTGGA
NONE
OsAffx.11952.1.S1_at--1123--5971Chr02:4801724..4801748 (25 bp)
GAGACATCTGCAACCGTGATCCAAT
LOC_Os02g09330
OsAffx.11952.1.S1_at--215--7031Chr02:4801793..4801817 (25 bp)
GTACAGGCTGAGTTGCGTGACAAAC
LOC_Os02g09330
OsAffx.11952.1.S1_at--721--6511Chr02:4801847..4802020 (25 bp)
GATTTGTCCGACCTAAAGGATCCTA
LOC_Os02g09330
OsAffx.11952.1.S1_at--658--7371Chr02:4802041..4802065 (25 bp)
GTGTTTAGGCTAGAGCGGTTCGCAA
LOC_Os02g09330
OsAffx.11952.1.S1_at--953--971Chr02:4802122..4802146 (25 bp)
AGGAGGATGTGCTCTGGTCTAGCCT
LOC_Os02g09330
OsAffx.11952.1.S1_at--693--7811Chr02:4802137..4802161 (25 bp)
GGTCTAGCCTTTGCGGAAGCTATTA
LOC_Os02g09330
OsAffx.11952.1.S1_at--802--271Chr02:4802161..4802185 (25 bp)
ATAGATCTACTGTTTTCTACCCTGC
LOC_Os02g09330
OsAffx.11952.1.S1_at--703--8631Chr02:4802200..4802224 (25 bp)
TGGGAGCTCCCTTGCGGAATGACAG
LOC_Os02g09330
OsAffx.11952.1.S1_at--200--1311Chr02:4802249..4802273 (25 bp)
AGATGGCCCTTACTGTTCGGAGGAA
LOC_Os02g09330
OsAffx.11952.1.S1_at--664--2391Chr02:4802312..4802336 (25 bp)
AAACTCAAACTTCTTCTGCACTTCT
LOC_Os02g09330
Target Sequence 
GAGCCCCACCGATCTCTTTAGTGGAGGGAGTGAGACATCTGCAACCGTGATCCAATGGGCCATGTCGGAGCTCATGAAGA
ATCCAAGGGTTATGCGAAAGGTACAGGCTGAGTTGCGTGACAAACTAGCAGGGAAGCCAAGGGTGACAGAGGATGATTTG
TCCGACCTAAAGGATCCTAATTATTGGGATGATGCTGAGGTGTTTAGGCTAGAGCGGTTCGCAAATAGTACCATAGACTT
CAAAGGCATGGACATGGAGTTCATACCATTCGGGGCGGGAAGGAGGATGTGCTCTGGTCTAGCCTTTGCGGAAGCTATTA
TAGATCTACTGTTTTCTACCCTGCTCTTCCACTTCGACTGGGAGCTCCCTTGCGGAATGACAGCAAGTGAGCTGGACATG
ATAGAGGAGATGGCCCTTACTGTTCGGAGGAAGAACGACCTTCACCTCCGCCCCATCCTCCGTGTGCCGCAAACTCAAAC
TTCTTCTGCACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis