Browse Element(s) Details


OsAffx.24172.2.S1_at

Description tigr:9630.m00844
TID=OsAffx.24172.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=elicitor-inducible cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0931011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09250Os.16786.1.S1_at11/112+4765148..4767212Cytochrome P450 family protein, expressed
LOC_Os02g09260Os.53919.1.S1_at1/112+4768852..4771021Cytochrome P450 family protein
LOC_Os02g09270Os.24882.1.S1_s_at11/112+4774333..4776354Cytochrome P450 family protein, expressed
LOC_Os02g09280OsAffx.21870.2.S1_x_at3/112+4779347..4780268hypothetical protein
LOC_Os02g09280OsAffx.21870.3.S1_x_at1/112+4779347..4780268hypothetical protein
LOC_Os02g09290OsAffx.24172.1.S1_at11/112+4785232..4787038Cytochrome P450 71D10, putative, expressed
LOC_Os02g09300OsAffx.30486.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09300OsAffx.9762.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09310OsAffx.24172.2.S1_at11/112+4791454..4793238Cytochrome P450 family protein
LOC_Os02g09320OsAffx.24173.1.S1_at11/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09320Os.52428.1.S1_x_at1/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24172.2.S1_at--204--8911Chr02:4792638..4792662 (25 bp)
TGAGACATCCTCGAATGCGATCCAA
LOC_Os02g09310
OsAffx.24172.2.S1_at--123--3311Chr02:4792709..4792733 (25 bp)
CACAGAACGAGGTGCGAAGCATCCT
LOC_Os02g09310
OsAffx.24172.2.S1_at--1090--8171Chr02:4792739..4792763 (25 bp)
GGAAGCCCACAGTGACTGAGGCCGA
LOC_Os02g09310
OsAffx.24172.2.S1_at--511--5991Chr02:4792801..4792825 (25 bp)
GAGACTCATAGGCTGCATCCGGTAT
LOC_Os02g09310
OsAffx.24172.2.S1_at--784--911Chr02:4792810..4792834 (25 bp)
AGGCTGCATCCGGTATTGCCATTGC
LOC_Os02g09310
OsAffx.24172.2.S1_at--790--10211Chr02:4792823..4792847 (25 bp)
TATTGCCATTGCTCACCCCAAGGGT
LOC_Os02g09310
OsAffx.24172.2.S1_at--882--3991Chr02:4792881..4792905 (25 bp)
CGTGCCCCAAGGCAGTGTCATATTC
LOC_Os02g09310
OsAffx.24172.2.S1_at--558--7131Chr02:4792897..4792921 (25 bp)
GTCATATTCATAAAGTCGTGGGCAA
LOC_Os02g09310
OsAffx.24172.2.S1_at--278--2371Chr02:4792936..4792960 (25 bp)
AAACATTGGGATGACGCCGAGACAT
LOC_Os02g09310
OsAffx.24172.2.S1_at--553--8911Chr02:4792947..4792971 (25 bp)
TGACGCCGAGACATTCAAACCAGAG
LOC_Os02g09310
OsAffx.24172.2.S1_at--869--7091Chr02:4793071..4793095 (25 bp)
GTCAGCATAGAGTTCATCCTCACCA
LOC_Os02g09310
Target Sequence 
TGAGACATCCTCGAATGCGATCCAATGGGCAATGTCAGAGCTGGTGAGGAACCCAAAAGTGATGGAGAAAGCACAGAACG
AGGTGCGAAGCATCCTCAAAGGGAAGCCCACAGTGACTGAGGCCGACATGGTAGACCTAACGTATGTGAAGATGATTGTC
AAGGAGACTCATAGGCTGCATCCGGTATTGCCATTGCTCACCCCAAGGGTGTGCCAGCAAACTTGCCAGATCATGGGGTA
TGACGTGCCCCAAGGCAGTGTCATATTCATAAAGTCGTGGGCAATAATGAGGGACCCCAAACATTGGGATGACGCCGAGA
CATTCAAACCAGAGCGGTTTGAGGATAGTGAGATCGATCTCAAGGGCACAAACTATGAGTTCACTCCATATGGGGCCGGA
CGCAGGATCTGCCCTGGCTTGGCATTAGCCCAGGTCAGCATAGAGTTCATCCTCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24172.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis