Browse Element(s) Details


Os.53919.1.S1_at

Description gb:AK100832.1
DB_XREF= gi:32986041
TID=Os.53919.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123D13, full insert sequence.
FL= gb:AK100832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0922011/11Cytochrome P450 family protein, expressed
LOC_Os02g092601/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed
LOC_Os02g09200OsAffx.11948.1.S1_at11/112+4724316..4726012Cytochrome P450 family protein, expressed
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09230OsAffx.24171.1.S1_at11/112+4747250..4748210hypothetical protein
LOC_Os02g09240Os.54895.1.S1_x_at11/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09240Os.54895.1.S1_at10/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09250Os.16786.1.S1_at11/112+4765148..4767212Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53919.1.S1_at--528--7011Chr02:4742657..4742681 (25 bp)
GTACTACTATGCTTGTTAACGTGTG
LOC_Os02g09220
Os.53919.1.S1_at--865--5972Chr02:4742719..4742743 (25 bp)
GAGACATTTAGACCCGAGCGATTTG
LOC_Os02g09220
Os.53919.1.S1_at--888--1471Chr02:4742835..4742859 (25 bp)
AGCAATCATGGAGCTCGTTCTAGCC
LOC_Os02g09220
Os.53919.1.S1_at--800--3791Chr02:4742859..4742883 (25 bp)
CTCGCTTCTCTATCACTTTGATTGG
LOC_Os02g09220
Os.53919.1.S1_at--123--5931Chr02:4742884..4742908 (25 bp)
GAGCTTCCTGATGGGATCTCGCCGA
LOC_Os02g09220
Os.53919.1.S1_at--939--711Chr02:4742957..4742981 (25 bp)
ATGATCTTTATCTCGTTCCAACTGT
LOC_Os02g09220
Os.53919.1.S1_at--111--2571Chr02:4742976..4743000 (25 bp)
AACTGTTCGTGTGCCTATGTCGACT
LOC_Os02g09220
Os.53919.1.S1_at--370--1991Chr02:4742998..4743022 (25 bp)
ACTGCCCTATAGCTGTTTACACTTA
LOC_Os02g09220
Os.53919.1.S1_at--838--3111Chr02:4743031..4743055 (25 bp)
AATATTTGTCTCATCTGTACGCGCC
LOC_Os02g09220
Os.53919.1.S1_at--1159--9431Chr02:4743044..4743068 (25 bp)
TCTGTACGCGCCTATATGATAAACT
LOC_Os02g09220
Os.53919.1.S1_at--1027--8871Chr02:4743079..4743103 (25 bp)
TGATGGATTGATGTACTCCTACTTT
LOC_Os02g09220
Target Sequence 
GTACTACTATGCTTGTTAACGTGTGGGCAATCGGTAGAGACCCTAAGTATTGGGAGGACGCTGAGACATTTAGACCCGAG
CGATTTGAGGATGGACATATAGACTTCAAAGGAACAGATTTTGAATTTATACCGTTTGGAGCTGGGCGAAGGATGTGCCC
TGGTATGGCATTTGCAGAAGCAATCATGGAGCTCGTTCTAGCCTCGCTTCTCTATCACTTTGATTGGGAGCTTCCTGATG
GGATCTCGCCGACCAAGGTGGACATGATGGAGGAGTTGGGTGCAACTATTCGAAAAAAGAATGATCTTTATCTCGTTCCA
ACTGTTCGTGTGCCTATGTCGACTGCCCTATAGCTGTTTACACTTAAGAGACAAAATATTTGTCTCATCTGTACGCGCCT
ATATGATAAACTATATAACTTTTGATGGATTGATGTACTCCTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis