Browse Element(s) Details


Os.54895.1.S1_x_at

Description gb:AK107034.1
DB_XREF= gi:32992243
TID=Os.54895.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B07, full insert sequence.
FL= gb:AK107034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0924011/11Cytochrome P450 family protein, expressed
LOC_Os02g092201/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09230OsAffx.24171.1.S1_at11/112+4747250..4748210hypothetical protein
LOC_Os02g09240Os.54895.1.S1_x_at11/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09240Os.54895.1.S1_at10/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09250Os.16786.1.S1_at11/112+4765148..4767212Cytochrome P450 family protein, expressed
LOC_Os02g09260Os.53919.1.S1_at1/112+4768852..4771021Cytochrome P450 family protein
LOC_Os02g09270Os.24882.1.S1_s_at11/112+4774333..4776354Cytochrome P450 family protein, expressed
LOC_Os02g09280OsAffx.21870.2.S1_x_at3/112+4779347..4780268hypothetical protein
LOC_Os02g09280OsAffx.21870.3.S1_x_at1/112+4779347..4780268hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54895.1.S1_x_at--195--9872Chr02:4755760..4755784 (25 bp)
TACTTCTCCCTAGGGAATGTCGGGA
LOC_Os02g09240
Os.54895.1.S1_x_at--98--6151Chr02:4755792..4755816 (25 bp)
GAGGTCATGGGTTACGATATCCCCA
LOC_Os02g09240
Os.54895.1.S1_x_at--200--1891Chr02:4755838..4755862 (25 bp)
ACGTATGGGCAATAGGTAGAGATCC
LOC_Os02g09240
Os.54895.1.S1_x_at--797--7971Chr02:4755875..4755899 (25 bp)
GGATGCTGAGACATTCATACCTGAA
LOC_Os02g09240
Os.54895.1.S1_x_at--1116--6151Chr02:4755906..4755930 (25 bp)
GAGGATGGCCATATAGACTTCAAAG
LOC_Os02g09240
Os.54895.1.S1_x_at--750--7291Chr02:4755974..4755998 (25 bp)
GTGCCCTGGCATGGCATTTGCAGAA
LOC_Os02g09240
Os.54895.1.S1_x_at--442--9991Chr02:4756018..4756042 (25 bp)
TAGCCTCATTGCTTTACCACTTTGA
LOC_Os02g09240
Os.54895.1.S1_x_at--913--3311Chr02:4756035..4756059 (25 bp)
CACTTTGATTGGGAGCTCCCTGATG
LOC_Os02g09240
Os.54895.1.S1_x_at--87--6051Chr02:4756092..4756116 (25 bp)
GAGTTGGGTGCTACAATTCGAAGAA
LOC_Os02g09240
Os.54895.1.S1_x_at--1106--7451Chr02:4756147..4756171 (25 bp)
GTGTGCCTTTGTCAACTGTCTTATA
LOC_Os02g09240
Os.54895.1.S1_x_at--1135--1951Chr02:4756161..4756185 (25 bp)
ACTGTCTTATAGTTGTTTACACTTA
LOC_Os02g09240
Target Sequence 
TACTTCTCCCTAGGGAATGTCGGGAGACATGTGAGGTCATGGGTTACGATATCCCCATAGGTANTACTGTGCTNGTTAAC
GTATGGGCAATAGGTAGAGATCCTAAGTATTGGGAGGATGCTGAGACATTCATACCTGAACGATTTGAGGATGGCCATAT
AGACTTCAAAGGAACAAACTTTGAATTTATACCGTTTGGAGCTGGACGAAGGATGTGCCCTGGCATGGCATTTGCAGAAG
TAATCATGGAGCTNGCTCTAGCCTCATTGCTTTACCACTTTGATTGGGAGCTCCCTGATGGCATCTCGCCAACCAAGNTG
GACATGATGGAGGAGTTGGGTGCTACAATTCGAAGAAAGAACGATCTTTACCTTATTCCTNCTGTCCGTGTGCCTTTGTC
AACTGTCTTATAGTTGTTTACACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54895.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis