Browse Element(s) Details


Os.51356.1.S1_at

Description gb:AK062633.1
DB_XREF= gi:32972651
TID=Os.51356.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C11, full insert sequence.
FL= gb:AK062633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0944011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51356.1.S1_at--158--8111Chr02:4844315..4844339 (25 bp)
GGACCGTGTTCCCTTATGCAGCAGC
LOC_Os02g09440
Os.51356.1.S1_at--747--1671Chr02:4844293..4844317 (25 bp)
AGCCGCATGTACTGCATTGTTCTTC
LOC_Os02g09440
Os.51356.1.S1_at--1040--9051Chr02:4844281..4844305 (25 bp)
TGCATTGTTCTTCTACCTCAGTCGT
LOC_Os02g09440
Os.51356.1.S1_at--655--7191Chr02:4844261..4844285 (25 bp)
GTCGTCGCAACTCCAGTAACTGAAT
LOC_Os02g09440
Os.51356.1.S1_at--214--711Chr02:4844209..4844233 (25 bp)
ATGTTGCGACGCATGCCAACTCAGT
LOC_Os02g09440
Os.51356.1.S1_at--298--9651Chr02:4844189..4844213 (25 bp)
TCAGTCCTCTTCTGAGTTCAGACAC
LOC_Os02g09440
Os.51356.1.S1_at--792--3851Chr02:4844147..4844171 (25 bp)
CTGAACATAGGCTTGCATGCACACT
LOC_Os02g09440
Os.51356.1.S1_at--167--9051Chr02:4844134..4844158 (25 bp)
TGCATGCACACTAACATACCCTTTT
LOC_Os02g09440
Os.51356.1.S1_at--906--10671Chr02:4844081..4844105 (25 bp)
TTCCTTATTTGTATGCTAGCTTCTG
LOC_Os02g09440
Os.51356.1.S1_at--268--5471Chr02:4844002..4844026 (25 bp)
GAACTGCCATTCTTCTGAAACTGTT
LOC_Os02g09440
Os.51356.1.S1_at--738--3851Chr02:4843988..4844012 (25 bp)
CTGAAACTGTTTTACTCGATCTTTT
LOC_Os02g09440
Target Sequence 
GGACCGTGTTCCCTTATGCAGCAGCCGCATGTACTGCATTGTTCTTCTACCTCAGTCGTCGCAACTCCAGTAACTGAATG
TGGTGATACTTCATTTGCAATATTGCATGTTGCGACGCATGCCAACTCAGTCCTCTTCTGAGTTCAGACACATCCATGAA
TCTTATATCTGAACATAGGCTTGCATGCACACTAACATACCCTTTTCCCCTAATGTACAATTTTATATATTATTTTCCTT
ATTTGTATGCTAGCTTCTGAAGAGCTATGAAATGTAGAAGTATATTGGTTCAGAAAGCTTGTATAGAAGTATAGAACTGC
CATTCTTCTGAAACTGTTTTACTCGATCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis