Browse Element(s) Details


Os.5603.1.S1_at

Description gb:AK068914.1
DB_XREF= gi:32978938
TID=Os.5603.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002M10, full insert sequence.
FL= gb:AK068914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0945011/11Glycerophosphoryl diester phosphodiesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0031225cellular_componentanchored to membrane
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5603.1.S1_at--889--7211Chr02:4849409..4849433 (25 bp)
GTCGATCGCGCAGGTGAACGGCTTC
LOC_Os02g09450
Os.5603.1.S1_at--62--4671Chr02:4849320..4849344 (25 bp)
GCGTGCTCCGGAACGAGTTCATGAA
LOC_Os02g09450
Os.5603.1.S1_at--543--6071Chr02:4849306..4849330 (25 bp)
GAGTTCATGAACCTCGGATTCGACT
LOC_Os02g09450
Os.5603.1.S1_at--1037--8971Chr02:4849299..4849323 (25 bp)
TGAACCTCGGATTCGACTACTGGGC
LOC_Os02g09450
Os.5603.1.S1_at--276--8651Chr02:4849279..4849303 (25 bp)
TGGGCCGACCCCATCATCGAGATCG
LOC_Os02g09450
Os.5603.1.S1_at--624--7251Chr02:4848167..4848191 (25 bp)
GTCCGTGCAGCGATCTGAGCCTGAA
LOC_Os02g09450
Os.5603.1.S1_at--844--8911Chr02:4848140..4848164 (25 bp)
TGAGCTACGCGATCCTGCCGGCGGA
LOC_Os02g09450
Os.5603.1.S1_at--297--9351Chr02:4847885..4847909 (25 bp)
TCGCTTCCCTGTTTCTGATACTGCT
LOC_Os02g09450
Os.5603.1.S1_at--752--851Chr02:4847852..4847876 (25 bp)
ATGGCTTCCATTGACGACGATCTTG
LOC_Os02g09450
Os.5603.1.S1_at--46--6271Chr02:4847806..4847830 (25 bp)
GATGTTTTCTCTGCGTTTTTCTCTC
LOC_Os02g09450
Os.5603.1.S1_at--739--9251Chr02:4847783..4847807 (25 bp)
TCCTCGTATCCTACTTTGTACTGTG
LOC_Os02g09450
Target Sequence 
GTCGATCGCGCAGGTGAACGGCTTCTTCCTCACGCGGTTCACCGACGTCGCCGACCGGATGCACGCCGCCAACCTCACCG
TCTACGTCGGCGTGCTCCGGAACGAGTTCATGAACCTCGGATTCGACTACTGGGCCGACCCCATCATCGAGATCGCCACC
TACGCCTTCCACGTCATGGCCGACGGCCTCATCACCGAGTACCCCGCCACCGCCGCCACCTACTTCCGGAGTCCGTGCAG
CGATCTGAGCCTGAACCTGAGCTACGCGATCCTGCCGGCGGACGCCGGCGCCGGTGGCTGCCGTGTGCTGGCCGCCGCCG
TCGCTTCCCTGTTTCTGATACTGCTGCCATCTCATGGCTTCCATTGACGACGATCTTGATGGATGGCATTGTANTAACAG
ATGTTTTCTCTGCGTTTTTCTCTCCTCGTATCCTACTTTGTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis