Browse Element(s) Details


OsAffx.11954.1.S1_s_at

Description tigr:9630.m00855
TID=OsAffx.11954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0942011/11cyclase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11954.1.S1_s_at--1143--2451Chr02:4833953..4833977 (25 bp)
AACACTGACATCAAGCTAGTTGGTA
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--1092--8831Chr02:4834188..4834212 (25 bp)
TGATCACTTGATCACTGCCCATGTG
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--91--5231Chr02:4834829..4834853 (25 bp)
GAATATCATCCTAGTCGAAGGCCTG
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--674--2951Chr02:4834846..4834870 (25 bp)
AAGGCCTGAAGCTAGACGATGTCAA
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--87--911Chr02:4834870..4834894 (25 bp)
AGGCTGGAATCTACATGCTGCATTG
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--280--2111Chr02:4834882..4834906 (25 bp)
ACATGCTGCATTGCTTACCTCTGAG
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--360--9971Chr02:4834897..4834921 (25 bp)
TACCTCTGAGGCTGGTTGGATCCGA
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--702--7951Chr02:4834914..4834938 (25 bp)
GGATCCGAGGGCTCACCAATCAGGT
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--1157--51Chr02:4834955..4834979 (25 bp)
ATTGCTTCATCACTGCTCCTGATAA
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--36--6471Chr02:4834975..4834999 (25 bp)
GATAATGGCGACACTGCAGATCATG
LOC_Os02g09420
OsAffx.11954.1.S1_s_at--801--6431Chr02:4834993..4835017 (25 bp)
GATCATGCCATCTGATGCTGCTACA
LOC_Os02g09420
Target Sequence 
AACACTGACATCAAGCTAGTTGGTATTGACTATCTATCAGTTGCAGCATATGATCACTTGATCACTGCCCATGTGGTCTT
TTTCAAATTCCCGAATATCATCCTAGTCGAAGGCCTGAAGCTAGACGATGTCAAGGCTGGAATCTACATGCTGCATTGCT
TACCTCTGAGGCTGGTTGGATCCGAGGGCTCACCAATCAGGTGCATCCTGATCAAGTGATTGCTTCATCACTGCTCCTGA
TAATGGCGACACTGCAGATCATGCCATCTGATGCTGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11954.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis