Browse Element(s) Details


Os.54110.1.S1_at

Description gb:AK106917.1
DB_XREF= gi:32992126
TID=Os.54110.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B01, full insert sequence.
FL= gb:AK102004.1 gb:AK106917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0953011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g09520OsAffx.11957.1.S1_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09520OsAffx.11957.1.S1_x_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09530Os.54110.1.S1_at11/112+4908955..4911331expressed protein
LOC_Os02g09540OsAffx.11958.1.S1_s_at11/112+4913033..4913439expressed protein
LOC_Os02g09550NANA2+4915505..4921468retrotransposon protein, putative, unclassified
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54110.1.S1_at--996--2951Chr02:4910260..4910507 (25 bp)
AAGGCCATCTCTTGGCAGCACGTGT
LOC_Os02g09530
Os.54110.1.S1_at--934--7471Chr02:4910239..4910263 (25 bp)
GTGTGGAGCCACTTTTGCTTATGTT
LOC_Os02g09530
Os.54110.1.S1_at--479--8871Chr02:4909525..4909890 (25 bp)
TGATGAGGTTCATTTTGCCCAGCAT
LOC_Os02g09530
Os.54110.1.S1_at--489--10711Chr02:4909511..4909535 (25 bp)
TTGCCCAGCATCTTTCTGTTGAATA
LOC_Os02g09530
Os.54110.1.S1_at--651--6651Chr02:4909494..4909518 (25 bp)
GTTGAATACAGACCCTGCAAGTCCC
LOC_Os02g09530
Os.54110.1.S1_at--322--1071Chr02:4909479..4909499 (21 bp)
AGTCCCTTTCCCTCAGAAGGTCAAG
LOC_Os02g09530
Os.54110.1.S1_at--228--1211Chr02:4909297..4909321 (25 bp)
AGTTTGTTGGACGATCTCGGCGAAG
LOC_Os02g09530
Os.54110.1.S1_at--37--10431Chr02:4909257..4909281 (25 bp)
TTATCGACACGAGGCATTCTACTAG
LOC_Os02g09530
Os.54110.1.S1_at--459--9971Chr02:4909154..4909178 (25 bp)
TAGCGGTTGGTTCTCCTATTCTAGA
LOC_Os02g09530
Os.54110.1.S1_at--102--6051Chr02:4909071..4909095 (25 bp)
GAGATACTCGAACTCGGCCAAAGCT
LOC_Os02g09530
Os.54110.1.S1_at--910--71Chr02:4908998..4909022 (25 bp)
ATTGCCAACTGTATCTCACACGTGT
LOC_Os02g09530
Target Sequence 
AAGGCCATCTCTTGGCAGCACGTGTGGAGCCACTTTTGCTTATGTTTCAAGGACGAGAAATTGACAGATGACAAGGCAAC
ATTGCGTGCATTTGGTATAAGAGATGGTGATGAGGTTCATTTTGCCCAGCATCTTTCTGTTGAATACAGACCCTGCAAGT
CCCTTTCCCTCAGAAGGTCAAGGACTTCATTGGATGATTTCAGTGCTAGGTCAAGGAGTTTGTTGGACGATCTCGGCGAA
GATGATGGTGATAAGTTTATCGACACGAGGCATTCTACTAGTGNTTTGGAGGAAGGGCTATATGTTTATCAGCACGATGA
GGAGCGCATGGAAGAGAGTCGCAAGAAGGGAGGCTTCTTTAGCGGTTGGTTCTCCTATTCTAGATTGAGGGGCAACAGTA
GGACACATTCAGAGGATGCCATCCAATCCTCCTGCGAAAAGAGAGATACTCGAACTCGGCCAAAGCTGGGGAGATGGTTG
TCTTCCAAAAAAACTAAAGGCACATAGCAATCTNGATTGCCAACTGTATCTCACACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis