Browse Element(s) Details


OsAffx.11957.1.S1_x_at

Description tigr:9630.m00867
TID=OsAffx.11957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0952011/11hypothetical protein
LOC_Os01g314944/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g09520OsAffx.11957.1.S1_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09520OsAffx.11957.1.S1_x_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09530Os.54110.1.S1_at11/112+4908955..4911331expressed protein
LOC_Os02g09540OsAffx.11958.1.S1_s_at11/112+4913033..4913439expressed protein
LOC_Os02g09550NANA2+4915505..4921468retrotransposon protein, putative, unclassified
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11957.1.S1_x_at--263--6954Chr09:19016127..19016181 (25 bp)
GTAGCGAACTCGTCGTTCTCGGCGG
NONE
OsAffx.11957.1.S1_x_at--528--2851Chr02:4907078..4907102 (25 bp)
CAAGTCGTCCTTCCCGTCGGCGGCA
LOC_Os02g09520
OsAffx.11957.1.S1_x_at--416--7191Chr02:4907093..4907117 (25 bp)
GTCGGCGGCAACAGCGAACTCGTCG
LOC_Os02g09520
OsAffx.11957.1.S1_x_at--1036--8351Chr02:4907096..4907120 (25 bp)
GGCGGCAACAGCGAACTCGTCGTTC
LOC_Os02g09520
OsAffx.11957.1.S1_x_at--420--5133Chr04:34896410..34896429 (20 bp)
GCAACAGCGAACTCGTCGTTCCCGG
NONE
OsAffx.11957.1.S1_x_at--930--8356Chr09:19016279..19016303 (25 bp)
GGCGTCGATGTCGTCCTTCCCGGAG
NONE
OsAffx.11957.1.S1_x_at--10--9392Chr02:4907136..4907160 (25 bp)
TCGATGTCGTCCTTCCCGGAGGCAG
LOC_Os02g09520
OsAffx.11957.1.S1_x_at--889--4697Chr09:19016277..19016301 (25 bp)
GCGGCGTCGATGTCGTCCTTCCCGG
NONE
OsAffx.11957.1.S1_x_at--362--6271Chr02:4907198..4907222 (25 bp)
GATGTCATCCTTCCCGACGGCGGCA
LOC_Os02g09520
OsAffx.11957.1.S1_x_at--792--1636Chr09:19016280..19016303 (24 bp)
AGCGTCGATGTCGTCCTTCCCGGAG
NONE
OsAffx.11957.1.S1_x_at--11--9396Chr09:19016283..19016307 (25 bp)
TCGATGTCGTCCTTCCCGGAGGCGG
NONE
Target Sequence 
GTAGCGAACTCGTCGTTCTCGGCGGCGGCGGCGTCGATGTCGTCCTTCCCGCGCGGCGGCGTCGGCGTCCAAGTCGTCCT
TCCCGTCGGCGGCAACAGCGAACTCGTCGTTCCCGGCGGTGGCGGCGTCGATGTCGTCCTTCCCGGAGGCAGCGGCGTCG
ATGTCGTCCTTCCCGGCGGCGGCGGCGTCGATGTCATCCTTCCCGACGGCGGCAGCGTCGATGTCGTCCTTCCCGGAGGC
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11957.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis