Browse Element(s) Details


Os.9154.1.S1_at

Description gb:AK119989.1
DB_XREF= gi:37989612
TID=Os.9154.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-G04, full insert sequence.
FL= gb:AK119989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5622011/11expressed protein
LOC_Os03g477021/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9154.1.S1_at--1044--10531Chr01:32707119..32707143 (25 bp)
TTCAGGGCACTCACGGCGCACGAGC
LOC_Os01g56220
Os.9154.1.S1_at--74--1651Chr01:32707052..32707076 (25 bp)
AGCGCATGGTCCAAGCGTTCGACGA
LOC_Os01g56220
Os.9154.1.S1_at--1037--9351Chr01:32706982..32707006 (25 bp)
TCGACGTCGACTGGGTCCTCCGAAT
LOC_Os01g56220
Os.9154.1.S1_at--196--7211Chr01:32706903..32706927 (25 bp)
GTCGTCGCCGCTGCAAGATCTGGTG
LOC_Os01g56220
Os.9154.1.S1_at--1050--3431Chr01:32706870..32706894 (25 bp)
CAGATTATGTCTTGTTTTTACTATA
LOC_Os01g56220
Os.9154.1.S1_at--266--7071Chr01:32706799..32706823 (25 bp)
GTAAGGCACTAGTAATTTTTTGAGA
LOC_Os01g56220
Os.9154.1.S1_at--893--8895Chr03:26989390..26989410 (21 bp)
TGAGATAATAGTTGGCTGCCTTAGG
LOC_Os03g47702
Os.9154.1.S1_at--1120--8232Chr01:32706748..32706772 (25 bp)
GGCACTAGTAGTTTTCCTTAGGATA
LOC_Os01g56220
Os.9154.1.S1_at--865--7931Chr01:32706728..32706752 (25 bp)
GGATATAAGCCACTCCTAATTTTTA
LOC_Os01g56220
Os.9154.1.S1_at--102--4411Chr01:32706695..32706719 (25 bp)
GCCACTAATCTATACCTTATGGTGT
LOC_Os01g56220
Os.9154.1.S1_at--302--4312Chr12:4864505..4864824 (25 bp)
CCTTATGGTGTAAGCCACTGGCCTA
NONE
Target Sequence 
TTCAGGGCACTCACGGCGCACGAGCTCAGGGAGGTCNCGCGTCGCATGGTCGCCGACGGCTACGCCCAGCGCATGGTCCA
AGCGTTCGACGACGCGGCGACGGTCGAGGTCCTCGAGGGGGAGGTGGTTCTTCGAGCTCGACGTCGACTGGGTCCTCCGA
ATCCGCGAGGGGCAGGGGTTACGGCAGCTNNNGAAGTCGGCCGCCTCCTCCCCGTCGTCGTCGCCGCTGCAAGATCTGGT
GGAGAGTGACAGATTATGTCTTGTTTTTACTATATATTTTTAACATCTATTTTTGAGATNATAGTTGGCTGCCTTAGGAT
GTAAGGCACTAGTAATTTTTTGAGATAATAGTTGGCTGCCTTAGGATGTAAGGCACTAGTAGTTTTCCTTAGGATATAAG
CCACTCCTAATTTTTAGGATGTAAGCCACTAATCTATACCTTATGGTGTAAGCCACTGGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis