Browse Element(s) Details


Os.15117.1.S1_at

Description gb:AK067198.1
DB_XREF= gi:32977216
TID=Os.15117.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Regulatory protein NPR1 (Nonexpresser of PR genes 1) (OSJNBb0053G03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098D13, full insert sequence.
FL= gb:AK067198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5620011/11Regulatory protein NPR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56170NANA1+32670773..32671687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009621biological_processresponse to pathogenic fungi
GO:0009625biological_processresponse to insect
GO:0009627biological_processsystemic acquired resistance
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009954biological_processproximal/distal pattern formation
GO:0010022biological_processmeristem determinacy
GO:0010227biological_processfloral organ abscission
GO:0048439biological_processflower morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15117.1.S1_at--543--6811Chr01:32698142..32698166 (25 bp)
GTTTTCTATCTTGTCATCTTCATCG
LOC_Os01g56200
Os.15117.1.S1_at--590--6791Chr01:32698208..32698232 (25 bp)
GTTTTGTAACAAATTTCCGCTCGTG
LOC_Os01g56200
Os.15117.1.S1_at--790--9291Chr01:32698223..32698247 (25 bp)
TCCGCTCGTGATGTTACTGGGACAA
LOC_Os01g56200
Os.15117.1.S1_at--899--2311Chr01:32698323..32698347 (25 bp)
AAAGTGCTGTTCTGGGCTGCACTCA
LOC_Os01g56200
Os.15117.1.S1_at--911--4751Chr01:32698338..32698362 (25 bp)
GCTGCACTCAGCTGGTTTATGGGAC
LOC_Os01g56200
Os.15117.1.S1_at--969--7631Chr01:32698358..32698382 (25 bp)
GGGACCCATGCGGTGAAACTGGCAA
LOC_Os01g56200
Os.15117.1.S1_at--407--2371Chr01:32698387..32698411 (25 bp)
AAACCAGCTGATTAGAGGCTCCAAA
LOC_Os01g56200
Os.15117.1.S1_at--505--1111Chr01:32698414..32698438 (25 bp)
AGTGTCTCTCGTGAATATGTTTGTA
LOC_Os01g56200
Os.15117.1.S1_at--751--3171Chr01:32698498..32698522 (25 bp)
AATTGTCTCGTAAGCATACTGCCAT
LOC_Os01g56200
Os.15117.1.S1_at--121--2331Chr01:32698558..32698582 (25 bp)
AAAGACGGCGTTGCTTATCGCCAAC
LOC_Os01g56200
Os.15117.1.S1_at--492--10151Chr01:32698573..32698597 (25 bp)
TATCGCCAACGCTATGTATCGGAGA
LOC_Os01g56200
Target Sequence 
GTTTTCTATCTTGTCATCTTCATCGTCNTCTTCGCCACCTCCCAAGGTTGCAAAGAAATGACAGAAGTTTTGTAACAAAT
TTCCGCTCGTGATGTTACTGGGACAAGAGATATCGATCAATAGACCTGTATAGTCTTACAGTGGTATAACAATTAGATAT
CGAAGCTTCTTCGAATATTAGAAAGTGCTGTTCTGGGCTGCACTCAGCTGGTTTATGGGACCCATGCGGTGAAACTGGCA
AAAGAAAACCAGCTGATTAGAGGCTCCAAAGNAGTGTCTCTCGTGAATATGTTTGTAGCATTCTGTTTTGTTCAGGATGG
CTNTAATGATAAAATCTTTTCAATAGATATATAGCTAATTGTCTCGTAAGCATACTGCCATTATTGAGATTGTAGAAGCT
GCAAGTTTTGTAAGAAAAAGACGGCGTTGCTTATCGCCAACGCTATGTATCGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis