Browse Element(s) Details


OsAffx.23805.1.S1_at

Description tigr:9629.m05497
TID=OsAffx.23805.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5621011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23805.1.S1_at--26--1951Chr01:32699473..32699497 (25 bp)
ACGGCGCCATATCGAGCACCATGGA
LOC_Os01g56210
OsAffx.23805.1.S1_at--434--2631Chr01:32699163..32699187 (25 bp)
AACCTACGGTGGATTCGTTGCCAGT
LOC_Os01g56210
OsAffx.23805.1.S1_at--98--9891Chr01:32699132..32699156 (25 bp)
TACATCGACGGCTATTTCAGCGCTT
LOC_Os01g56210
OsAffx.23805.1.S1_at--457--8711Chr01:32699092..32699116 (25 bp)
TGTCCTGCCTATCGTCGAAGTCTGG
LOC_Os01g56210
OsAffx.23805.1.S1_at--452--8071Chr01:32699056..32699080 (25 bp)
GGAGCAACAAGTCCTCGCCATTGAG
LOC_Os01g56210
OsAffx.23805.1.S1_at--354--6051Chr01:32699024..32699048 (25 bp)
GAGTTGGCGTTCCATGAGACGTACA
LOC_Os01g56210
OsAffx.23805.1.S1_at--29--1391Chr01:32699008..32699032 (25 bp)
AGACGTACACGGCTCAGAAGCTGTG
LOC_Os01g56210
OsAffx.23805.1.S1_at--451--1031Chr01:32698981..32699005 (25 bp)
AGGTCCCAAGCCCTGAGCTTAGAGG
LOC_Os01g56210
OsAffx.23805.1.S1_at--277--6831Chr01:32698925..32698949 (25 bp)
GTTTCAGGTTATCGCGAGTACTTGT
LOC_Os01g56210
OsAffx.23805.1.S1_at--852--7011Chr01:32698908..32698932 (25 bp)
GTACTTGTTGGAGCATCCTGAGCTG
LOC_Os01g56210
OsAffx.23805.1.S1_at--57--2791Chr01:32698883..32698907 (25 bp)
AAGAGACTGGTTAGCCGCGGAAACA
LOC_Os01g56210
Target Sequence 
ACGGCGCCATATCGAGCACCATGGAGGAGACCAAGGCGCTCGTCGAGGCCGCCGCCGACGACGACCCGACGGAGATCGCG
CGAGGTAGCGGAGACGACGTGCACACGAGCGCTCGCGTCATGGTGGACTGCGTCGCCAGCTCGAGCCGTTCTCCAACCTA
CGGTGGATTCGTTGCCAGTGGCGGCTACATCGACGGCTATTTCAGCGCTTCTTGGGCGCCCGTGCTGTCCTGCCTATCGT
CGAAGTCTGGCCTCTCTCCCTGGAGCAACAAGTCCTCGCCATTGAGGAAATTCGAGTTGGCGTTCCATGAGACGTACACG
GCTCAGAAGCTGTGGAAGGTCCCAAGCCCTGAGCTTAGAGGAAGGCTGCGAAAAACTATCACCGAGAGAGTTGTTTCAGG
TTATCGCGAGTACTTGTTGGAGCATCCTGAGCTGAAGAGACTGGTTAGCCGCGGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis