Browse Element(s) Details


Os.22836.2.S1_x_at

Description gb:AK068819.1
DB_XREF= gi:32978844
TID=Os.22836.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DEIH-box RNADNA helicase (OSJNBb0053G03.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165H02, full insert sequence.
FL= gb:AK068819.1 gb:AK121269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g561909/11RNA helicase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed
LOC_Os01g56160OsAffx.21600.1.S1_at11/111+32665178..32665936hypothetical protein
LOC_Os01g56170NANA1+32670773..32671687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22836.2.S1_x_at--972--5151Chr01:32686938..32686962 (25 bp)
GCAACGTGATGCCTTGAGCTGAAAT
LOC_Os01g56190
Os.22836.2.S1_x_at--319--1431Chr01:32686971..32686995 (25 bp)
AGAAACGCTGTTTTGCTGGTGACTT
LOC_Os01g56190
Os.22836.2.S1_x_at--711--7771Chr01:32687013..32687037 (25 bp)
GGTGCACGTTGCTATTCTGTTCAGC
LOC_Os01g56190
Os.22836.2.S1_x_at--1159--3611Chr01:32687050..32687074 (25 bp)
CTTGAGCGTGCCTTGTAATCTGATG
LOC_Os01g56190
Os.22836.2.S1_x_at--1145--1331Chr01:32687139..32687163 (25 bp)
AGAGTGACCCATACAGGCTCAACGG
LOC_Os01g56190
Os.22836.2.S1_x_at--23--5551Chr01:32687221..32687245 (25 bp)
GAAACTTTTGTTTTGCTCTGATGAT
LOC_Os01g56190
Os.22836.2.S1_x_at--1028--4451Chr01:32687333..32687357 (25 bp)
GCCTAAATTCTCCATGCCATGTGTA
LOC_Os01g56190
Os.22836.2.S1_x_at--670--2131Chr01:32687361..32687385 (25 bp)
ACAGTGATGTTATGCCGTGCGCCTA
LOC_Os01g56190
Os.22836.2.S1_x_at--988--6851Chr01:32687401..32687425 (25 bp)
GTTTGAGATAGCAGTCGCACCCAGA
LOC_Os01g56190
Os.22836.2.S1_x_at--563--5071Chr01:32687457..32687481 (25 bp)
GCAGCTGAGCTCCTGATAATCTGGA
NONE
Os.22836.2.S1_x_at--1006--9691Chr01:32687493..32687517 (25 bp)
TCACAACTTCTGGTTTTTAGGTTAT
NONE
Target Sequence 
GCAACGTGATGCCTTGAGCTGAAATCATAATCCAGAAACGCTGTTTTGCTGGTGACTTGCAGCCTTCCTTTGTTCGGTGC
ACGTTGCTATTCTGTTCAGCTCTGCTTCCCAACTTGAGCGTGCCTTGTAATCTGATGGCAAGGCGACGCCATGCCATGCC
ACAGTCCACTGGTGTCTAACCACCAAATTGTACTCGTTGGAAGAGTGACCCATACAGGCTCAACGGGAGTCTGAATTCTG
ATGTCCCNCATACAGCCATACAGGAGTAGTAGGTTGGTAGTCTGAAACTTTTGTTTTGCTCTGATGATGTACGTGAAGAA
GTGGTGTGTTTCCCTTCTTCGACCTATGGTTCTTTTATAGTACTGGAGTAGTACAGTAGTACTAGNAGTACATGCGCCTA
AATTCTCCATGCCATGTGTAACCACAGTGATGTTATGCCGTGCGCCTAAATTTTCCCGTTCTGGTTTGAGATAGCAGTCG
CACCCAGAGACGCTGCGGGNCTGTTGGGAAGCTGGATAAGCAGCTGAGCTCCTGATAATCTGGAAAAGTTGGGTTTCACA
ACTTCTGGTTTTTAGGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22836.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis