Browse Element(s) Details


OsAffx.21600.1.S1_at

Description tigr:9629.m05492
TID=OsAffx.21600.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5616011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed
LOC_Os01g56160OsAffx.21600.1.S1_at11/111+32665178..32665936hypothetical protein
LOC_Os01g56170NANA1+32670773..32671687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21600.1.S1_at--613--2931Chr01:32665340..32665364 (25 bp)
AAGGCGATCAGGGAGTCGGTCCTCA
LOC_Os01g56160
OsAffx.21600.1.S1_at--188--6111Chr01:32665352..32665376 (25 bp)
GAGTCGGTCCTCATCAACCTGCTGT
LOC_Os01g56160
OsAffx.21600.1.S1_at--664--2631Chr01:32665367..32665391 (25 bp)
AACCTGCTGTCCTGGAGCCTCGAGC
LOC_Os01g56160
OsAffx.21600.1.S1_at--731--8071Chr01:32665522..32665546 (25 bp)
GGAGCTCCTCAAGTCCTTCGACAGG
LOC_Os01g56160
OsAffx.21600.1.S1_at--905--2851Chr01:32665532..32665556 (25 bp)
AAGTCCTTCGACAGGCAGCTCATCG
LOC_Os01g56160
OsAffx.21600.1.S1_at--460--5891Chr01:32665661..32665685 (25 bp)
GAGCTGTGGACCCTGGCCCACGTCA
LOC_Os01g56160
OsAffx.21600.1.S1_at--430--10631Chr01:32665781..32665805 (25 bp)
TTCGAGGCGGTGCTCATCCCGTTGA
LOC_Os01g56160
OsAffx.21600.1.S1_at--697--9091Chr01:32665791..32665815 (25 bp)
TGCTCATCCCGTTGAGATCGCTCAA
LOC_Os01g56160
OsAffx.21600.1.S1_at--696--6031Chr01:32665804..32665828 (25 bp)
GAGATCGCTCAAGTCTATTTTCGAT
LOC_Os01g56160
OsAffx.21600.1.S1_at--318--7151Chr01:32665816..32665840 (25 bp)
GTCTATTTTCGATGACCTCCTCAGT
LOC_Os01g56160
OsAffx.21600.1.S1_at--696--5831Chr01:32665829..32665853 (25 bp)
GACCTCCTCAGTAGTAGCAGATCAC
LOC_Os01g56160
Target Sequence 
AAGGCGATCAGGGAGTCGGTCCTCATCAACCTGCTGTCCTGGAGCCTCGAGCAGCGGATGCTGTCGCCCGAGGCGGCGGC
GCATGCCACCGCCGACGGGCTCGTGGGCGTGGTCCGGTGCCACGCCGTGGACTCCGGCGTCACCTTCTACGGGATGGAGG
GGATCGGCAGGAGCTTCGAGGAGGAGCTCCTCAAGTCCTTCGACAGGCAGCTCATCGCCTTCCGCGGCGGCCTCCCCAGC
AGGGGGGAGAAGGTGCCCGTCTCCGCGGGCGAGGCGGCGCGGATCCGCGCGCTCCACGCCGCGTTCGTGGAACGGGACGC
GGAGCTGTGGACCCTGGCCCACGTCACCCTGGCCGAGGACCTCGCGGCGTCGCGCGGCGGGGACGCGTCGGCCGCCTCCA
TCCCGCGCATGGTGGAGCGCCTCCGCCAGGTGCGGCGCCTCTTCGAGGCGGTGCTCATCCCGTTGAGATCGCTCAAGTCT
ATTTTCGATGACCTCCTCAGTAGTAGCAGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis