Browse Element(s) Details


Os.29016.1.S1_at

Description gb:AK110759.1
DB_XREF= gi:32995968
TID=Os.29016.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucosyltransferase (OSJNBb0053G03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-H04, full insert sequence.
FL= gb:AK110759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5613011/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed
LOC_Os01g56160OsAffx.21600.1.S1_at11/111+32665178..32665936hypothetical protein
LOC_Os01g56170NANA1+32670773..32671687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29016.1.S1_at--966--9491Chr01:32645963..32645987 (25 bp)
TCTCCTTCCTTCTATTAACAGCAGC
LOC_Os01g56130
Os.29016.1.S1_at--818--3831Chr01:32645928..32645952 (25 bp)
CTGCTCTCGGTGCAAGGCATACATT
LOC_Os01g56130
Os.29016.1.S1_at--378--9571Chr01:32645877..32645901 (25 bp)
TCATTCTTGGTTGTCGGCCTCGACT
LOC_Os01g56130
Os.29016.1.S1_at--112--8431Chr01:32645862..32645886 (25 bp)
GGCCTCGACTTGATCGGCGAGCAAG
LOC_Os01g56130
Os.29016.1.S1_at--807--1411Chr01:32645728..32645752 (25 bp)
AGACAAGAAGCTCTGGTCCCATTGA
LOC_Os01g56130
Os.29016.1.S1_at--524--7671Chr01:32645699..32645723 (25 bp)
GGGTTACAATTCATCGGAGACTCTG
LOC_Os01g56130
Os.29016.1.S1_at--951--271Chr01:32645655..32645679 (25 bp)
ATATGGCTTTTGGAGTCGGCCTGCA
LOC_Os01g56130
Os.29016.1.S1_at--133--6111Chr01:32645643..32645667 (25 bp)
GAGTCGGCCTGCAATGATGGTCTTT
LOC_Os01g56130
Os.29016.1.S1_at--261--811Chr01:32645579..32645603 (25 bp)
ATGGGTTGTTTCTACTTACTTGACA
LOC_Os01g56130
Os.29016.1.S1_at--410--9831Chr01:32645524..32645548 (25 bp)
TAAATGTACTTTGGCCGATCACTAT
LOC_Os01g56130
Os.29016.1.S1_at--740--831Chr01:32645501..32645525 (25 bp)
ATGGATGCATACTGTGGTACTCAAT
LOC_Os01g56130
Target Sequence 
TCTCCTTCCTTCTATTAACAGCAGCAGCTCGAAGCCTGCTCTCGGTGCAAGGCATACATTTCTACTTCCTTCTGTTCCAA
GGGGTCTCATTCTTGGTTGTCGGCCTCGACTTGATCGGCGAGCAAGTCGAGTGATAGAATACATGTGGTATAATCGGTTT
CTTTTTTTCTTTGGAGGGGGATATGCAATCAAAGAGAAGTTCTGGTAAAGGGAAAACGATACAGTATTGATGCAAAGACA
AGAAGCTCTGGTCCCATTGATGGGGGGTTACAATTCATCGGAGACTCTGAATTGTTGGGGGTGTAGATATATGGCTTTTG
GAGTCGGCCTGCAATGATGGTCTTTGATGTCTCAATTCTTTTGTAAGAATTCTCAGTGGTTAGAATGGGTTGTTTCTACT
TACTTGACAGTTTACCTTCAAATGGAGATACTGTTATTTTAAATGTACTTTGGCCGATCACTATGGATGCATACTGTGGT
ACTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis