Browse Element(s) Details


Os.33926.1.S1_at

Description gb:AK073493.1
DB_XREF= gi:32983516
TID=Os.33926.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0053G03.3 (OSJNBb0053G03.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042A17, full insert sequence.
FL= gb:AK073493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5609011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33926.1.S1_at--888--6431Chr01:32621367..32621391 (25 bp)
GATCATCGATGAGTGGACGGCGCAT
LOC_Os01g56090
Os.33926.1.S1_at--122--5751Chr01:32621382..32621406 (25 bp)
GACGGCGCATGTTGGGCCAGACACA
LOC_Os01g56090
Os.33926.1.S1_at--931--10631Chr01:32621582..32621606 (25 bp)
TTCGCCGCTGTCGTTTAGAGCGAGT
LOC_Os01g56090
Os.33926.1.S1_at--321--5891Chr01:32621609..32621633 (25 bp)
GAGCGGCCACAACCTAGAGCAGAAT
LOC_Os01g56090
Os.33926.1.S1_at--777--5131Chr01:32621639..32621663 (25 bp)
GCAAAGTCAGGAGGTCTCATGCTCT
LOC_Os01g56090
Os.33926.1.S1_at--433--631Chr01:32621657..32621681 (25 bp)
ATGCTCTGCTGCTCATGTCATTGTT
LOC_Os01g56090
Os.33926.1.S1_at--1064--5051Chr01:32621715..32621739 (25 bp)
GCAGCATGCGGTCTCAATTTGCAGA
LOC_Os01g56090
Os.33926.1.S1_at--696--5891Chr01:32621770..32621794 (25 bp)
GAGCTGGCCGCGATGGAGATTCTAC
LOC_Os01g56090
Os.33926.1.S1_at--271--111Chr01:32621788..32621812 (25 bp)
ATTCTACTTCACACATCTGTTGCTG
LOC_Os01g56090
Os.33926.1.S1_at--981--2371Chr01:32621882..32621906 (25 bp)
AAACTGAGAGCCTGTTAGCTCCTCT
LOC_Os01g56090
Os.33926.1.S1_at--86--10351Chr01:32621933..32621957 (25 bp)
TTTACTTTTCTCATACTCAACCTTT
LOC_Os01g56090
Target Sequence 
GATCATCGATGAGTGGACGGCGCATGTTGGGCCAGACACAGGAGATGACAAGGATGAGGATACCAACCAAATCTTCTTCG
CCGCTGTCGTTTAGAGCGAGTGAGAGCGGCCACAACCTAGAGCAGAATTCTATGCAAAGTCAGGAGGTCTCATGCTCTGC
TGCTCATGTCATTGTTTTGTGTGTTTTGGCGAGAAGAGCTGCCCGTGCTGCAGCATGCGGTCTCAATTTGCAGATCCATT
TCTACAATGAAGGCCAGCGTACTGGAGCTGGCCGCGATGGAGATTCTACTTCACACATCTGTTGCTGTTGTGGAGAGAAT
TGATTAGAAAATCGTAGACTTTGATTGGATTGCGGTGTGGTTAGCAGGAGAGTATAAAACTGAGAGCCTGTTAGCTCCTC
TCTCGCTTTTCTTTTTGTGTGTGTTATTTTACTTTTCTCATACTCAACCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis