Browse Element(s) Details


Os.38258.2.S1_at

Description gb:AK069471.1
DB_XREF= gi:32979495
TID=Os.38258.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.28 (P0403C05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023M16, full insert sequence.
FL= gb:AK069471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5607011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0045045biological_processsecretory pathway
GO:0016020cellular_componentmembrane
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38258.2.S1_at--559--3251Chr01:32603477..32603501 (25 bp)
CAACCTTGTCCTGTGGCTGTCGCAA
LOC_Os01g56070
Os.38258.2.S1_at--927--2631Chr01:32603476..32603500 (25 bp)
AACCTTGTCCTGTGGCTGTCGCAAG
LOC_Os01g56070
Os.38258.2.S1_at--884--10791Chr01:32603472..32603496 (25 bp)
TTGTCCTGTGGCTGTCGCAAGGATA
LOC_Os01g56070
Os.38258.2.S1_at--549--8711Chr01:32603471..32603495 (25 bp)
TGTCCTGTGGCTGTCGCAAGGATAA
LOC_Os01g56070
Os.38258.2.S1_at--568--7251Chr01:32603470..32603494 (25 bp)
GTCCTGTGGCTGTCGCAAGGATAAT
LOC_Os01g56070
Os.38258.2.S1_at--543--3891Chr01:32603467..32603491 (25 bp)
CTGTGGCTGTCGCAAGGATAATATC
LOC_Os01g56070
Os.38258.2.S1_at--947--7531Chr01:32603465..32603489 (25 bp)
GTGGCTGTCGCAAGGATAATATCTT
LOC_Os01g56070
Os.38258.2.S1_at--745--8331Chr01:32603463..32603487 (25 bp)
GGCTGTCGCAAGGATAATATCTTGC
LOC_Os01g56070
Os.38258.2.S1_at--729--9751Chr01:32603449..32603473 (25 bp)
TAATATCTTGCATTATTTGTGTCAT
LOC_Os01g56070
Os.38258.2.S1_at--997--10151Chr01:32603446..32603470 (25 bp)
TATCTTGCATTATTTGTGTCATATA
LOC_Os01g56070
Os.38258.2.S1_at--587--4951Chr01:32603440..32603464 (25 bp)
GCATTATTTGTGTCATATATGGATT
LOC_Os01g56070
Target Sequence 
CAACCTTGTCCTGTGGCTGTCGCAAGGATAATATCTTGCATTATTTGTGTCATATATGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38258.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis