Browse Element(s) Details


OsAffx.11618.1.S1_at

Description tigr:9629.m05480
TID=OsAffx.11618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5606011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11618.1.S1_at--807--2611Chr01:32600262..32600286 (25 bp)
AACCCTAGAGTTTCGCTCATACAGT
LOC_Os01g56060
OsAffx.11618.1.S1_at--1153--1331Chr01:32600256..32600280 (25 bp)
AGAGTTTCGCTCATACAGTTGCCAA
LOC_Os01g56060
OsAffx.11618.1.S1_at--315--1211Chr01:32600254..32600278 (25 bp)
AGTTTCGCTCATACAGTTGCCAAGA
LOC_Os01g56060
OsAffx.11618.1.S1_at--1039--2451Chr01:32600104..32600128 (25 bp)
AACACTCAAAGCCAGATTTGCCGAG
LOC_Os01g56060
OsAffx.11618.1.S1_at--1006--2351Chr01:32600097..32600121 (25 bp)
AAAGCCAGATTTGCCGAGCGAACAC
LOC_Os01g56060
OsAffx.11618.1.S1_at--265--10291Chr01:32600088..32600112 (25 bp)
TTTGCCGAGCGAACACGTGGTCGAG
LOC_Os01g56060
OsAffx.11618.1.S1_at--405--4251Chr01:32599977..32600001 (25 bp)
CCGTCCAGGAGCACTGTTGGAATGC
LOC_Os01g56060
OsAffx.11618.1.S1_at--694--8071Chr01:32599970..32599994 (25 bp)
GGAGCACTGTTGGAATGCAAATCAA
LOC_Os01g56060
OsAffx.11618.1.S1_at--122--3591Chr01:32599933..32599957 (25 bp)
CATTTGGCAGGATTCTTTGCGTGCT
LOC_Os01g56060
OsAffx.11618.1.S1_at--406--8271Chr01:32599928..32599952 (25 bp)
GGCAGGATTCTTTGCGTGCTAGAGA
LOC_Os01g56060
OsAffx.11618.1.S1_at--501--9551Chr01:32599920..32599944 (25 bp)
TCTTTGCGTGCTAGAGAAGATCAGC
LOC_Os01g56060
Target Sequence 
AACCCTAGAGTTTCGCTCATACAGTTGCCAAGAGACCAGGAGCACCAAGGAGTCGAAGCTGTCACGGAGGTGCTCAGGTA
AGCAGGCCCTGGAGGACGGCCACCAGTCCTGGAACCAGCTGCCACGGGGGAGAGAGGGCAGCCCAGCTAGGAGGCGACAA
CACTCAAAGCCAGATTTGCCGAGCGAACACGTGGTCGAGGAGGATGTGGTTCGCCGTCTCGAGATCCTGGGCGCAAAAGG
GGAAGGCCGAGTGACTATCGATGCCACGTTTCTGGAGGAGATCAGCCGTCCAGGAGCACTGTTGGAATGCAAATCAAAGG
AAGAACTTGCATTTGGCAGGATTCTTTGCGTGCTAGAGAAGATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis