Browse Element(s) Details


Os.50634.1.S1_at

Description gb:NM_191371.1
DB_XREF= gi:34909825
GEN=P0403C05.21
TID=Os.50634.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.21 (P0403C05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0403C05.21 (P0403C05.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g560003/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50634.1.S1_at--839--151NONE
ATTTTCACGATTTGGAATCCAAGGG
NONE
Os.50634.1.S1_at--946--10371NONE
TTTTCACGATTTGGAATCCAAGGGT
NONE
Os.50634.1.S1_at--1031--10291NONE
TTTCACGATTTGGAATCCAAGGGTT
NONE
Os.50634.1.S1_at--605--10491NONE
TTCACGATTTGGAATCCAAGGGTTT
NONE
Os.50634.1.S1_at--901--1591NONE
AGCGACCAATTTATGTTTCCTGGAG
NONE
Os.50634.1.S1_at--213--4591Chr01:32574037..32574407 (25 bp)
GCGACCAATTTATGTTTCCTGGAGG
LOC_Os01g56000
Os.50634.1.S1_at--843--4071Chr01:32574038..32574408 (25 bp)
CGACCAATTTATGTTTCCTGGAGGT
LOC_Os01g56000
Os.50634.1.S1_at--716--5851Chr01:32574039..32574409 (25 bp)
GACCAATTTATGTTTCCTGGAGGTT
LOC_Os01g56000
Target Sequence 
ATTTTCACGATTTGGAATCCAAGGGTTTCAGGGTATAATGCAGGCTTCACAGTACCAACAGAGCGACCAATTTATGTTTC
CTGGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis