Browse Element(s) Details


Os.9039.1.S1_at

Description gb:AK066796.1
DB_XREF= gi:32976814
TID=Os.9039.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.18 (P0403C05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079D18, full insert sequence.
FL= gb:AK066796.1 gb:AK066328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5595011/11Acetamidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0004328molecular_functionformamidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9039.1.S1_at--218--411Chr01:32554387..32554411 (25 bp)
ATCAGTTGCCTACAAGCGTGCTGTC
LOC_Os01g55950
Os.9039.1.S1_at--1124--3011Chr01:32554359..32554383 (25 bp)
AATGCCATTGAGTACCTTTCCAGAT
LOC_Os01g55950
Os.9039.1.S1_at--173--7871Chr01:32554230..32554254 (25 bp)
GGTATACCTTTTGCTATCATGCTGC
LOC_Os01g55950
Os.9039.1.S1_at--959--10151Chr01:32554216..32554240 (25 bp)
TATCATGCTGCCCATGTGAGGGTAG
LOC_Os01g55950
Os.9039.1.S1_at--302--6951Chr01:32554178..32554202 (25 bp)
GTAGACTCCCCTAATGCAGTGGCAA
LOC_Os01g55950
Os.9039.1.S1_at--15--2931Chr01:32553282..32553306 (25 bp)
AAGGCTTCCAGATGTTTTGAGATGC
LOC_Os01g55950
Os.9039.1.S1_at--898--10251Chr01:32553267..32553291 (25 bp)
TTTGAGATGCTCGTCCGATGGACAC
LOC_Os01g55950
Os.9039.1.S1_at--53--8791Chr01:32553237..32553261 (25 bp)
TGTTACACAGGACCCAAGCGGTACA
LOC_Os01g55950
Os.9039.1.S1_at--23--6891Chr01:32553079..32553103 (25 bp)
GTATTTTCTGTATTGTACGTGCCGT
LOC_Os01g55950
Os.9039.1.S1_at--1035--6991Chr01:32553065..32553089 (25 bp)
GTACGTGCCGTATTTTCTGTATTGC
LOC_Os01g55950
Os.9039.1.S1_at--629--4371Chr01:32553038..32553062 (25 bp)
CCAAGCACCAACTCGTGTTATCTGA
LOC_Os01g55950
Target Sequence 
ATCAGTTGCCTACAAGCGTGCTGTCCTCAATGCCATTGAGTACCTTTCCAGATTTGGGTACTCCAAGGAGCAGGTATACC
TTTTGCTATCATGCTGCCCATGTGAGGGTAGGATATCTGGAATAGTAGACTCCCCTAATGCAGTGGCAACTCTTGCCATC
CCTACAGCAATATTTGACCAGGATGTAAAACCAAAACGCCTGAGTGGGAAACAAGGACCNAAAGTTGAGAAGGCTTCCAG
ATGTTTTGAGATGCTCGTCCGATGGACACCTTCCTGTTACACAGGACCCAAGCGGTACAAAGGCACCTTAACTACTGCAA
AATGCGTGGTCATATTCACAATCCACTATATGATTAGTAATTATAAATCTAAATAATCATATTTATTATTCCAACATCTA
TCTAGTGTAATCCATAATGTGGGTCACATGTTGTATTTTCTGTATTGTACGTGCCGTATTTTCTGTATTGCTACCAAGCA
CCAACTCGTGTTATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis