Browse Element(s) Details


OsAffx.23803.1.S1_at

Description tigr:9629.m05473
TID=OsAffx.23803.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5599011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23803.1.S1_at--906--9512Chr01:32567501..32567525 (25 bp)
TCTCTCTTACCGAGCAGCGCACAGG
LOC_Os01g55990
OsAffx.23803.1.S1_at--768--9351Chr01:32567322..32567346 (25 bp)
TCGACGAGGCGGAACTACGGCTTGT
LOC_Os01g55990
OsAffx.23803.1.S1_at--526--9931Chr01:32567307..32567331 (25 bp)
TACGGCTTGTAGAAGATCGGGTCAT
LOC_Os01g55990
OsAffx.23803.1.S1_at--409--9971Chr01:32567283..32567307 (25 bp)
TAGACAATGACCCAACCGTGGCCGG
LOC_Os01g55990
OsAffx.23803.1.S1_at--82--5871Chr01:32567259..32567283 (25 bp)
GAGCCAAGGCAGTTGCTCCTTTCAG
LOC_Os01g55990
OsAffx.23803.1.S1_at--1094--4371Chr01:32567222..32567246 (25 bp)
CCAACCTCTCGTGGAGCGCGGTGGA
LOC_Os01g55990
OsAffx.23803.1.S1_at--425--5651Chr01:32567187..32567211 (25 bp)
GACAGCAACCATGCGTTGTGGCGAT
LOC_Os01g55990
OsAffx.23803.1.S1_at--1048--2631Chr01:32567181..32567205 (25 bp)
AACCATGCGTTGTGGCGATTCCGCC
LOC_Os01g55990
OsAffx.23803.1.S1_at--745--3911Chr01:32567140..32567164 (25 bp)
CTGGCGCTGGATCTAAAATCGATGA
LOC_Os01g55990
OsAffx.23803.1.S1_at--358--2731Chr01:32567049..32567073 (25 bp)
AAGCAACAACCAGTAATTCTTACAT
LOC_Os01g55990
OsAffx.23803.1.S1_at--617--8551Chr01:32567015..32567039 (25 bp)
TGGATATCTTAGATCTAAACCGATG
LOC_Os01g55990
Target Sequence 
TCTCTCTTACCGAGCAGCGCACAGGGGCGGGGAGGTGGGCGGCGGCGTGGTGATGGGCAATGGGCTGGAGGAGGCGCGGT
GCTGGCACCTGCGGGCGGTGGTGTTGGCGGTGGAGGGTGCCACCGGGCGGCGGCTACACGCCGCAGAGGCCGAGCTGGGG
CTCGCCGCCGATGAGGGGATCGACGAGGCGGAACTACGGCTTGTAGAAGATCGGGTCATAGACAATGACCCAACCGTGGC
CGGAGCCAAGGCAGTTGCTCCTTTCAGGGAGGAGCATGGCCAACCTCTCGTGGAGCGCGGTGGAGATCCTCGGGGACAGC
AACCATGCGTTGTGGCGATTCCGCCAGCCGCCCGCGGCTGCCTGGCGCTGGATCTAAAATCGATGAAAAAAACAACAAAC
AATATTTCTTACATGATAGAAAAGGGAGATCTTAGATCTAAATCAATAAAAAAAGCAACAACCAGTAATTCTTACATGAT
GGAAAATGGATATCTTAGATCTAAACCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis