Browse Element(s) Details


Os.50634.1.S1_x_at

Description gb:NM_191371.1
DB_XREF= gi:34909825
GEN=P0403C05.21
TID=Os.50634.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.21 (P0403C05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0403C05.21 (P0403C05.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5600010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50634.1.S1_x_at--134--3911Chr01:32572556..32572580 (25 bp)
CTGGTCATGAACTTTTTGTGCGGAA
LOC_Os01g56000
Os.50634.1.S1_x_at--154--131Chr01:32572589..32572613 (25 bp)
ATTCAGTCCCTGACATGGAGTTTAT
LOC_Os01g56000
Os.50634.1.S1_x_at--74--651Chr01:32574012..32574036 (25 bp)
ATGCAGGCTTCACAGTACCAACAGA
LOC_Os01g56000
Os.50634.1.S1_x_at--902--1591NONE
AGCGACCAATTTATGTTTCCTGGAG
NONE
Os.50634.1.S1_x_at--246--10291Chr01:32574397..32574421 (25 bp)
TTTCCTGGAGGTTCAGCACAGCAGT
LOC_Os01g56000
Os.50634.1.S1_x_at--53--5031Chr01:32574417..32574441 (25 bp)
GCAGTCTGAGAAAAGGCCACCTCCA
LOC_Os01g56000
Os.50634.1.S1_x_at--898--4191Chr01:32574467..32574491 (25 bp)
CCCCACCATTTACTCGTCAAGATAT
LOC_Os01g56000
Os.50634.1.S1_x_at--1059--9911Chr01:32574585..32574609 (25 bp)
TACTGACCCTTCTGACTCACAAAAG
LOC_Os01g56000
Os.50634.1.S1_x_at--270--2431Chr01:32574605..32574629 (25 bp)
AAAAGCAACGTTCTCATCCTCGATG
LOC_Os01g56000
Os.50634.1.S1_x_at--214--6231Chr01:32574626..32574650 (25 bp)
GATGGCAGGGCTCTCTTTCAAAAAG
LOC_Os01g56000
Os.50634.1.S1_x_at--667--6831Chr01:32574718..32574826 (25 bp)
GTTTCTGAACCGACAGGGTGGCCTT
LOC_Os01g56000
Target Sequence 
CTGGTCATGAACTTTTTGTGCGGAACATAGACAATTCAGTCCCTGACATGGAGTTTATCAATGCATTTTCACGATTTGGA
ATCCAAGGGTTTCAGGGTATAATGCAGGCTTCACAGTACCAACAGAGCGACCAATTTATGTTTCCTGGAGGTTCAGCACA
GCAGTCTGAGAAAAGGCCACCTCCACCTCCACCTCCACCAAATGTAGCCCCCCCACCATTTACTCGTCAAGATATACCAC
CCCCACCACCATCTCCACCACCACTACCTATTACTCAGCCACCTTCTGTGCCACCACCCCCAAATTCCCCTCCTCCGCTT
CAACCTGCTACTGACCCTTCTGACTCACAAAAGCAACGTTCTCATCCTCGATGGCAGGGCTCTCTTTCAAAAAGTGGTTT
ACATTACTGTTCAATCTATGCAAGTAGAATAGAGTTGGATGCTTGTAGATATGAACATGCAGTTTCTGAACCGACAGGGT
GGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50634.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis