Browse Element(s) Details


Os.12501.1.S1_at

Description gb:AK102809.1
DB_XREF= gi:32988018
TID=Os.12501.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative auxin-responsive GH3 protein (P0403C05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108J10, full insert sequence.
FL= gb:AK102809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5594011/11indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12501.1.S1_at--328--3091Chr01:32551519..32551543 (25 bp)
AATACAGCCCGCACAAGAAGTGATC
LOC_Os01g55940
Os.12501.1.S1_at--1090--9831Chr01:32551550..32551574 (25 bp)
TACACTACACGGTCCAGTTGAGCTA
LOC_Os01g55940
Os.12501.1.S1_at--319--10751Chr01:32551567..32551591 (25 bp)
TTGAGCTAGACGACACAACGATATA
LOC_Os01g55940
Os.12501.1.S1_at--818--6511Chr01:32551586..32551610 (25 bp)
GATATATAGCCTTCTACTACAACTA
LOC_Os01g55940
Os.12501.1.S1_at--289--9651Chr01:32551624..32551648 (25 bp)
TCAGTCCCAGTGCTTATACAGTCGG
LOC_Os01g55940
Os.12501.1.S1_at--244--10171Chr01:32551638..32551662 (25 bp)
TATACAGTCGGTGTCAGTGTCAGTG
LOC_Os01g55940
Os.12501.1.S1_at--905--6352Chr07:17130489..17130746 (25 bp)
GATGCCTGCTTCTTTGATCTTAGAT
NONE
Os.12501.1.S1_at--1155--6411Chr01:32551729..32551753 (25 bp)
GATCTTAGATCATGCTGTCCAGTGG
LOC_Os01g55940
Os.12501.1.S1_at--202--3871Chr01:32551825..32551849 (25 bp)
CTGGTAACGTCATTCTTGGCCGAAT
LOC_Os01g55940
Os.12501.1.S1_at--1037--871Chr01:32551858..32551882 (25 bp)
AGGCCTTGTTGGAGTATCTACCAAC
LOC_Os01g55940
Os.12501.1.S1_at--9--10131Chr01:32551899..32551923 (25 bp)
TATGTACTTTTTTCTGCTTGTGCAA
LOC_Os01g55940
Target Sequence 
AATACAGCCCGCACAAGAAGTGATCACTCNCTACACTACACGGTCCAGTTGAGCTAGACGACACAACGATATATAGCCTT
CTACTACAACTACTACTACCAGCACTCAGTCCCAGTGCTTATACAGTCGGTGTCAGTGTCAGTGNNNNNNCGTGTGTAAT
TTCTCGTGTTTAAGGCAGAGGGCATCAGGNGCCATACTCCTGGATGCCTGCTTCTTTGATCTTAGATCATGCTGTCCAGT
GGTAGTTACCATGTAATCATGTGTGAGATGTTATTTCTGAAGTGGAAATGGCGAGTGTTTGTGATGGGGTAAGCTGGTAA
CGTCATTCTTGGCCGAATANCATAATAGGCCTTGTTGGAGTATCTACCAACNACTNCTGTTGACCCATATGTACTTTTTT
CTGCTTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis