Browse Element(s) Details


Os.9039.3.S1_x_at

Description gb:NM_191368.1
DB_XREF= gi:34909819
GEN=P0403C05.18
TID=Os.9039.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.18 (P0403C05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0403C05.18 (P0403C05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5596011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9039.3.S1_x_at--576--8071Chr01:32558524..32558548 (25 bp)
GGAGCACTTGCTCTTGCACAGGATG
LOC_Os01g55960
Os.9039.3.S1_x_at--1091--1931Chr01:32558494..32558518 (25 bp)
ACGGCATTGCAGTGGTTCTCTCGGA
LOC_Os01g55960
Os.9039.3.S1_x_at--232--8611Chr01:32558459..32558483 (25 bp)
TGGTGTCCAGCCAGATGAAGTCACA
LOC_Os01g55960
Os.9039.3.S1_x_at--590--3671Chr01:32558434..32558458 (25 bp)
CTTATTTGTGTTCTTTGTGCCTGTG
LOC_Os01g55960
Os.9039.3.S1_x_at--467--9031Chr01:32558411..32558435 (25 bp)
TGCACATGCCGGGTTTGTTGACATT
LOC_Os01g55960
Os.9039.3.S1_x_at--182--6831Chr01:32558345..32558369 (25 bp)
GTTTCAACCTGGGATCAAGCACTTT
LOC_Os01g55960
Os.9039.3.S1_x_at--923--811Chr01:32558314..32558338 (25 bp)
ATGGTTGACCTTCTTAGTCGCTCTG
LOC_Os01g55960
Os.9039.3.S1_x_at--1082--8511Chr01:32558291..32558315 (25 bp)
TGGACACCTCGATGATGCCTTTAGG
LOC_Os01g55960
Os.9039.3.S1_x_at--179--5991Chr01:32558260..32558284 (25 bp)
GAGACAATGCCATCACAGCCAAATG
LOC_Os01g55960
Os.9039.3.S1_x_at--863--6611Chr01:32558150..32558174 (25 bp)
GTTGGAACCTGAGAATGCATCGCAT
LOC_Os01g55960
Os.9039.3.S1_x_at--63--911Chr01:32558027..32558051 (25 bp)
AGGCTGGAGCCTTCGAATGTTAGAG
LOC_Os01g55960
Target Sequence 
GGAGCACTTGCTCTTGCACAGGATGGCAAGACGGCATTGCAGTGGTTCTCTCGGATGCAGAATGATGGTGTCCAGCCAGA
TGAAGTCACACTTATTTGTGTTCTTTGTGCCTGTGCACATGCCGGGTTTGTTGACATTGGGAGGAAAATATTTAACCTGG
CCATACAAGGTGAGTATGGGTTTCAACCTGGGATCAAGCACTTTGGGTGCATGGTTGACCTTCTTAGTCGCTCTGGACAC
CTCGATGATGCCTTTAGGGTTGTTGAGACAATGCCATCACAGCCAAATGCAGTGATATGGGGCTTGCTATTAAGAGGCTG
CAGGGCCCGTGGCGACTCATGGTTGAGTGAGCATGTGACAATGAGGCTGGTGGAGTTGGAACCTGAGAATGCATCGCATT
ATGTTCTGTTATCAAATTTGTATGCTGAGACAGGGAGGTGGCAGGAAGCTCAGGGGATCTTGCATTGGATGAAGAAGAAG
GGACTGAGGAAAGATGCAGGCTGGAGCCTTCGAATGTTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9039.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis